[←][→] ath   AT4G37120 Gene
functional annotation
Function   Pre-mRNA splicing Prp18-interacting factor  
GO BP
GO:0008284 [list] [network] positive regulation of cell population proliferation  (26 genes)  IGI  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IEA  
GO:0008380 [list] [network] RNA splicing  (272 genes)  TAS  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0000386 [list] [network] second spliceosomal transesterification activity  (7 genes)  IBA  
GO:0030628 [list] [network] pre-mRNA 3'-splice site binding  (9 genes)  IEA  
GO:0003727 [list] [network] single-stranded RNA binding  (64 genes)  TAS  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_568017.1 
BLAST NP_568017.1 
Orthologous [Ortholog page] SMP1 (ath)  LOC4344572 (osa)  LOC7453862 (ppo)  LOC25499261 (mtr)  LOC100249416 (vvi)  LOC100502246 (zma)  LOC100778457 (gma)  LOC100797503 (gma)  LOC101252328 (sly)  LOC101260949 (sly)  LOC103629005 (zma)  LOC103844304 (bra) 
Subcellular
localization
wolf
nucl 4,  cyto 3,  mito 2,  nucl_plas 2  (predict for NP_568017.1)
Subcellular
localization
TargetP
other 8  (predict for NP_568017.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
Genes directly connected with SMP2 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.9 AT2G44200 pre-mRNA splicing factor domain-containing protein [detail] 819028
7.5 AT2G16860 GCIP-interacting family protein [detail] 816187
6.8 AT2G27285 nuclear speckle splicing regulatory-like protein (DUF2040) [detail] 817271
Coexpressed
gene list		 [Coexpressed gene list for SMP2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246221_at
246221_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246221_at
246221_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246221_at
246221_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829866      
Refseq ID (protein) NP_568017.1 


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