[←][→] ath   At4g38130 Gene
functional annotation
Function   histone deacetylase 1      
GO BP
GO:1902459 [list] [network] positive regulation of stem cell population maintenance  (2 genes)  IGI  
GO:1901001 [list] [network] negative regulation of response to salt stress  (14 genes)  IMP  
GO:0009861 [list] [network] jasmonic acid and ethylene-dependent systemic resistance  (18 genes)  IMP  
GO:0009294 [list] [network] DNA-mediated transformation  (26 genes)  IMP  
GO:0016573 [list] [network] histone acetylation  (34 genes)  IDA  
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (205 genes)  IDA IMP  
GO:2000026 [list] [network] regulation of multicellular organismal development  (499 genes)  IMP  
GO:0042742 [list] [network] defense response to bacterium  (980 genes)  IMP  
GO CC
GO:0016580 [list] [network] Sin3 complex  (7 genes)  IDA  
GO:0000118 [list] [network] histone deacetylase complex  (40 genes)  IPI  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (16 genes)  IDA IEA IMP ISS  
GO:0008270 [list] [network] zinc ion binding  (429 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001078511.1  NP_195526.1 
BLAST NP_001078511.1  NP_195526.1 
Orthologous [Ortholog page] LOC4328717 (osa)  LOC4328720 (osa)  LOC4341387 (osa)  LOC7496475 (ppo)  LOC18098185 (ppo)  LOC25490343 (mtr)  LOC25494460 (mtr)  HDA1 (gma)  HDA9 (gma)  HDA2 (gma)  HDA11 (gma)  HDA1 (sly)  HD1 (bra)  LOC123127307 (tae)  LOC123136961 (tae)  LOC123148078 (tae)  LOC123156061 (tae)  LOC123169305 (tae)  LOC123404168 (hvu)  LOC123407335 (hvu) 
Subcellular
localization
wolf
nucl 7,  cyto 1,  pero 1,  cysk 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001078511.1)
nucl 6,  cyto 2,  mito 1,  pero 1,  cysk 1  (predict for NP_195526.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001078511.1)
other 9  (predict for NP_195526.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath03018 RNA degradation 2
Genes directly connected with HD1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.0 AT1G33680 KH domain-containing protein [detail] 840259
6.8 HDA6 histone deacetylase 6 [detail] 836431
6.5 AT1G19880 Regulator of chromosome condensation (RCC1) family protein [detail] 838576
6.3 AT5G48385 FRIGIDA-like protein [detail] 834893
5.9 AT4G14300 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 827071
5.5 AT4G25320 AT hook motif DNA-binding family protein [detail] 828635
Coexpressed
gene list		 [Coexpressed gene list for HD1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252982_at
252982_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252982_at
252982_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252982_at
252982_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829969      
Refseq ID (protein) NP_001078511.1 
NP_195526.1 


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