[←][→] ath   AT4G39260 Gene
functional annotation
Function   cold, circadian rhythm, and RNA binding 1  
GO BP
GO:0000380 [list] [network] alternative mRNA splicing, via spliceosome  (11 genes)  IMP  
GO:0010043 [list] [network] response to zinc ion  (42 genes)  IEP  
GO:0045087 [list] [network] innate immune response  (322 genes)  IDA  
GO:0009409 [list] [network] response to cold  (411 genes)  IEP  
GO:0009737 [list] [network] response to abscisic acid  (574 genes)  IDA  
GO CC
GO:0005777 [list] [network] peroxisome  (325 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005618 [list] [network] cell wall  (685 genes)  IDA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005794 [list] [network] Golgi apparatus  (1430 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA RCA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  HDA IDA  
GO:0005739 [list] [network] mitochondrion  (4405 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
KEGG
Protein NP_195637.1  NP_849523.1  NP_849524.1  NP_849525.1 
BLAST NP_195637.1  NP_849523.1  NP_849524.1  NP_849525.1 
Orthologous [Ortholog page] LOC542562 (zma)  LOC542725 (zma)  GRP (gma)  GRP7 (ath)  LOC4333690 (osa)  LOC4352868 (osa)  LOC7461222 (ppo)  LOC11413934 (mtr)  LOC11413936 (mtr)  LOC11420057 (mtr)  LOC100194217 (zma)  LOC100305467 (gma)  LOC100796543 (gma)  LOC100853676 (vvi)  LOC101262262 (sly)  GRP1 (sly)  LOC101266771 (sly)  LOC103835130 (bra)  LOC103835157 (bra)  LOC103842502 (bra)  LOC103864290 (bra)  LOC112998378 (gma) 
Subcellular
localization
wolf
nucl 6,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for NP_195637.1)
nucl 4,  cyto 2,  mito 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_849523.1)
nucl 4,  cyto 3,  chlo 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_849524.1)
nucl 5,  cyto 2,  mito 1,  chlo 1,  extr 1,  cyto_mito 1,  mito_plas 1  (predict for NP_849525.1)
Subcellular
localization
TargetP
other 7  (predict for NP_195637.1)
other 7  (predict for NP_849523.1)
other 6  (predict for NP_849524.1)
other 6  (predict for NP_849525.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
Genes directly connected with CCR1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
13.6 GRP7 cold, circadian rhythm, and rna binding 2 [detail] 816705
8.5 GR-RBP2 glycine-rich RNA-binding protein 2 [detail] 827019
5.9 NUC-L1 nucleolin like 1 [detail] 841314
5.0 CIPK4 CBL-interacting protein kinase 4 [detail] 827106
Coexpressed
gene list		 [Coexpressed gene list for CCR1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252885_at
252885_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252885_at
252885_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252885_at
252885_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830082      
Refseq ID (protein) NP_195637.1 
NP_849523.1 
NP_849524.1 
NP_849525.1 


The preparation time of this page was 0.3 [sec].