[←][→] ath   AT5G03340 Gene
functional annotation
Function   ATPase, AAA-type, CDC48 protein  
GO BP
GO:0051228 [list] [network] mitotic spindle disassembly  (3 genes)  IBA  
GO:0097352 [list] [network] autophagosome maturation  (3 genes)  IBA  
GO:0030970 [list] [network] retrograde protein transport, ER to cytosol  (12 genes)  IBA  
GO:0071712 [list] [network] ER-associated misfolded protein catabolic process  (13 genes)  IBA  
GO:0016236 [list] [network] macroautophagy  (25 genes)  IBA  
GO:0030433 [list] [network] ubiquitin-dependent ERAD pathway  (36 genes)  IBA  
GO:0051301 [list] [network] cell division  (352 genes)  IEA  
GO CC
GO:0034098 [list] [network] VCP-NPL4-UFD1 AAA ATPase complex  (3 genes)  IBA  
GO:0009524 [list] [network] phragmoplast  (89 genes)  IEA  
GO:0005856 [list] [network] cytoskeleton  (368 genes)  IEA  
GO:0005618 [list] [network] cell wall  (685 genes)  IDA  
GO:0005794 [list] [network] Golgi apparatus  (1430 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IBA IDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  HDA ISM  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA  
GO MF
GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding  (23 genes)  IBA  
GO:0016887 [list] [network] ATPase activity  (507 genes)  IBA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04141 [list] [network] Protein processing in endoplasmic reticulum (211 genes)
Protein NP_568114.1 
BLAST NP_568114.1 
Orthologous [Ortholog page] CDC48 (gma)  CDC48 (ath)  AtCDC48B (ath)  LOC4331645 (osa)  LOC4348731 (osa)  LOC7467628 (ppo)  LOC7484424 (ppo)  LOC11432951 (mtr)  LOC25483983 (mtr)  LOC100246467 (vvi)  LOC100258668 (vvi)  LOC100265402 (vvi)  pco097024a (zma)  LOC100278319 (zma)  LOC100382880 (zma)  LOC100776762 (gma)  LOC100783508 (gma)  LOC100791603 (gma)  LOC100798680 (gma)  LOC100799580 (gma)  LOC100805946 (gma)  LOC100806067 (gma)  LOC100814141 (gma)  LOC101246391 (sly)  LOC101259229 (sly)  LOC101265798 (sly)  LOC101266129 (sly)  LOC101266255 (sly)  LOC103639569 (zma)  LOC103829916 (bra)  LOC103841245 (bra)  LOC103847873 (bra)  LOC103855479 (bra)  LOC103859279 (bra)  LOC103870514 (bra) 
Subcellular
localization
wolf
cyto 6,  nucl 1,  chlo 1,  pero 1,  cysk 1,  nucl_plas 1  (predict for NP_568114.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_568114.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 5
ath03050 Proteasome 4
Genes directly connected with AtCDC48C on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.1 CDC48 cell division cycle 48 [detail] 820142
7.1 Hsp70-15 Heat shock protein 70 (Hsp 70) family protein [detail] 844332
6.8 NAC2 NAC domain containing protein 2 [detail] 830320
Coexpressed
gene list		 [Coexpressed gene list for AtCDC48C]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250899_at
250899_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250899_at
250899_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250899_at
250899_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 831870      
Refseq ID (protein) NP_568114.1 


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