[←][→] ath   At5g04280 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein      
GO BP
GO:0048026 [list] [network] positive regulation of mRNA splicing, via spliceosome  (2 genes)  IGI  
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (205 genes)  IGI  
GO:0009409 [list] [network] response to cold  (472 genes)  IEP IGI  
GO:0009651 [list] [network] response to salt stress  (607 genes)  IEP  
GO:0009414 [list] [network] response to water deprivation  (1006 genes)  IEP  
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2529 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0031490 [list] [network] chromatin DNA binding  (21 genes)  IDA  
GO:0003682 [list] [network] chromatin binding  (105 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  HDA IDA  
GO:0003723 [list] [network] RNA binding  (1729 genes)  IDA  
GO:0003676 [list] [network] nucleic acid binding  (3100 genes)  IDA  
KEGG
Protein NP_001330677.1  NP_001330678.1  NP_001330679.1  NP_001330680.1  NP_196048.1 
BLAST NP_001330677.1  NP_001330678.1  NP_001330679.1  NP_001330680.1  NP_196048.1 
Orthologous [Ortholog page] AtRZ-1b (ath)  LOC4333731 (osa)  LOC4342599 (osa)  LOC7468443 (ppo)  LOC7479853 (ppo)  LOC100776333 (gma)  LOC100809519 (gma)  LOC101261205 (sly)  LOC101265498 (sly)  LOC103829974 (bra)  LOC103855562 (bra)  LOC112417082 (mtr)  LOC123044878 (tae)  LOC123052698 (tae)  LOC123087276 (tae)  LOC123090679 (tae)  LOC123095694 (tae)  LOC123188598 (tae)  LOC123426076 (hvu)  LOC123447135 (hvu) 
Subcellular
localization
wolf
nucl 6,  chlo 2,  mito 1  (predict for NP_001330677.1)
nucl 6,  chlo 2,  mito 1  (predict for NP_001330678.1)
nucl 6,  chlo 2,  mito 1  (predict for NP_001330679.1)
nucl 6,  chlo 2,  mito 1  (predict for NP_001330680.1)
chlo 5,  mito 3,  nucl 2  (predict for NP_196048.1)
Subcellular
localization
TargetP
mito 7,  other 4  (predict for NP_001330677.1)
mito 7,  other 4  (predict for NP_001330678.1)
mito 7,  other 4  (predict for NP_001330679.1)
mito 7,  other 4  (predict for NP_001330680.1)
other 7  (predict for NP_196048.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 12
ath03015 mRNA surveillance pathway 3
Genes directly connected with AtRZ-1c on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
11.3 RSZ22a RNA recognition motif and CCHC-type zinc finger domains containing protein [detail] 816995
9.4 CSP3 cold shock domain protein 3 [detail] 816297
9.3 RS2Z32 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [detail] 824518
9.2 SR34a SER/ARG-rich protein 34A [detail] 824105
9.0 AtRZ-1b RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [detail] 842359
8.3 RSZ22 serine/arginine-rich 22 [detail] 829285
6.2 AT1G75560 zinc knuckle (CCHC-type) family protein [detail] 843892
6.0 AT3G04590 AT hook motif DNA-binding family protein [detail] 819615
Coexpressed
gene list		 [Coexpressed gene list for AtRZ-1c]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245714_at
245714_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245714_at
245714_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
245714_at
245714_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830307      
Refseq ID (protein) NP_001330677.1 
NP_001330678.1 
NP_001330679.1 
NP_001330680.1 
NP_196048.1 


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