[←][→] ath   AT5G06160 Gene
functional annotation
Function   splicing factor-like protein  
GO BP
GO:0045694 [list] [network] regulation of embryo sac egg cell differentiation  (2 genes)  IMP  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IBA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_196234.3 
BLAST NP_196234.3 
Orthologous [Ortholog page] LOC4333915 (osa)  LOC7453827 (ppo)  LOC7489842 (ppo)  LOC11418483 (mtr)  LOC100217051 (zma)  LOC100253705 (vvi)  LOC100815393 (gma)  LOC100820038 (gma)  LOC101254575 (sly)  LOC103850610 (bra)  LOC103855659 (bra) 
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for NP_196234.3)
Subcellular
localization
TargetP
other 7  (predict for NP_196234.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03013 RNA transport 2
ath03015 mRNA surveillance pathway 2
Genes directly connected with ATO on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.0 AT3G52660 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 824432
7.6 AT1G28060 Pre-mRNA-splicing factor 3 [detail] 839699
7.4 EMB2777 Sas10/U3 ribonucleoprotein (Utp) family protein [detail] 818967
7.3 AT5G41770 crooked neck protein, putative / cell cycle protein [detail] 834182
6.9 XCT XAP5 family protein [detail] 816650
6.7 GLE1 nucleoporin GLE1-like protein [detail] 837869
6.4 SWI3A SWITCH/sucrose nonfermenting 3A [detail] 819375
5.5 IPT2 tRNAisopentenyltransferase 2 [detail] 817322
Coexpressed
gene list		 [Coexpressed gene list for ATO]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250715_at
250715_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250715_at
250715_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250715_at
250715_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830503      
Refseq ID (protein) NP_196234.3 


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