[←][→] ath   AT5G08540 Gene
functional annotation
Function   ribosomal RNA small subunit methyltransferase J  
GO BP
GO:0032259 [list] [network] methylation  (371 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (373 genes)  IBA IDA  
GO:0009941 [list] [network] chloroplast envelope  (666 genes)  IBA IDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA ISM  
GO:0009536 [list] [network] plastid  (5519 genes)  IDA  
GO MF
GO:0008168 [list] [network] methyltransferase activity  (340 genes)  IEA  
KEGG
Protein NP_568200.1 
BLAST NP_568200.1 
Orthologous [Ortholog page] LOC4336463 (osa)  LOC11419833 (mtr)  LOC100250766 (vvi)  LOC100382145 (zma)  LOC100804019 (gma)  LOC100809862 (gma)  LOC101268332 (sly)  LOC103847168 (bra)  LOC103855795 (bra) 
Subcellular
localization
wolf
chlo 9  (predict for NP_568200.1)
Subcellular
localization
TargetP
chlo 8,  mito 3  (predict for NP_568200.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
Genes directly connected with AT5G08540 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.7 CXIP2 CAX-interacting protein 2 [detail] 818407
7.1 FLU Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 820628
6.7 CLP2 CLP protease proteolytic subunit 2 [detail] 837797
6.5 AT1G24610 Rubisco methyltransferase family protein [detail] 839075
6.2 FAP1 Chalcone-flavanone isomerase family protein [detail] 825492
4.5 AT4G20030 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 827748
Coexpressed
gene list		 [Coexpressed gene list for AT5G08540]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250532_at
250532_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250532_at
250532_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250532_at
250532_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830754      
Refseq ID (protein) NP_568200.1 


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