[←][→] ath   At5g11010 Gene
functional annotation
Function   Pre-mRNA cleavage complex II protein family    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006364 [list] [network] rRNA processing  (169 genes)  ISS  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0051731 [list] [network] polynucleotide 5'-hydroxyl-kinase activity  (2 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001318534.1  NP_001330301.1  NP_568243.1  NP_850805.1 
BLAST NP_001318534.1  NP_001330301.1  NP_568243.1  NP_850805.1 
Orthologous [Ortholog page] LOC4325340 (osa)  LOC7484766 (ppo)  LOC25501714 (mtr)  LOC25501715 (mtr)  LOC100775314 (gma)  LOC100793271 (gma)  LOC100818392 (gma)  LOC101262800 (sly)  LOC103846760 (bra)  LOC123060415 (tae)  LOC123068941 (tae)  LOC123077482 (tae)  LOC123442939 (hvu) 
Subcellular
localization
wolf
nucl 3,  cyto 3,  cyto_nucl 3,  chlo 1,  extr 1,  nucl_plas 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001318534.1)
nucl 3,  cyto 3,  cyto_nucl 3,  chlo 1,  extr 1,  nucl_plas 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001330301.1)
cyto 4,  nucl 3,  extr 1,  nucl_plas 1  (predict for NP_568243.1)
nucl 3,  cyto 3,  cyto_nucl 3,  chlo 1,  extr 1,  nucl_plas 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_850805.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001318534.1)
chlo 7  (predict for NP_001330301.1)
chlo 7  (predict for NP_568243.1)
chlo 7  (predict for NP_850805.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
Genes directly connected with AT5G11010 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.1 AT1G75670 DNA-directed RNA polymerase [detail] 843901
6.7 AT3G07300 NagB/RpiA/CoA transferase-like superfamily protein [detail] 819918
6.4 RID2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 835833
6.4 QQT1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 832298
6.2 AT5G44450 alpha amino-terminal protein methyltransferase [detail] 834472
5.8 DBR1 debranching enzyme 1 [detail] 829305
5.6 POP4 ribonuclease P family protein [detail] 818920
4.8 AT5G37890 Protein with RING/U-box and TRAF-like domain [detail] 833768
Coexpressed
gene list		 [Coexpressed gene list for AT5G11010]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250410_at
250410_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250410_at
250410_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250410_at
250410_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830968      
Refseq ID (protein) NP_001318534.1 
NP_001330301.1 
NP_568243.1 
NP_850805.1 


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