ATTED-II : GeneID search result

[←][→] ath At5g13730 Gene

functional annotation

Function

sigma factor 4

GO BP

GO:0006352 [list] [network] DNA-templated transcription initiation	(26 genes)	ISS TAS
GO:0071482 [list] [network] cellular response to light stimulus	(146 genes)	IEP
GO:2001141 [list] [network] regulation of RNA biosynthetic process	(1660 genes)	IMP

GO CC

GO:0009507 [list] [network] chloroplast

(5004 genes)

ISM ISS

GO MF

GO:0016987 [list] [network] sigma factor activity

(6 genes)

IMP ISS

KEGG

Protein

NP_196877.1

BLAST

NP_196877.1

Orthologous

[Ortholog page] LOC11409298 (mtr) LOC18102037 (ppo) LOC101266372 (sly) LOC103846548 (bra) LOC103850892 (bra) LOC120579652 (mtr)

Subcellular
localization
wolf

chlo 9, plas 1, pero 1

(predict for NP_196877.1)

Subcellular
localization
TargetP

chlo 8

(predict for NP_196877.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00195	Photosynthesis	2

Genes directly connected with SIG4 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
8.6	CRR7	chlororespiratory reduction 7	[detail]	833917
8.4	PnsL2	PsbQ-like 2	[detail]	837974
7.2	AT4G21445	receptor-interacting protein	[detail]	825893
6.2	AT1G07440	NAD(P)-binding Rossmann-fold superfamily protein	[detail]	837256
4.8	AT1G53450	epstein-barr nuclear antigen	[detail]	841780

Coexpressed
gene list

[Coexpressed gene list for SIG4]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

250255_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

250255_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

250255_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	831218
Refseq ID (protein)	NP_196877.1

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