[←][→] ath   At5g15630 Gene
functional annotation
Function   COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0010215 [list] [network] cellulose microfibril organization  (17 genes)  IEA  
GO:0009834 [list] [network] plant-type secondary cell wall biogenesis  (97 genes)  IMP  
GO CC
GO:0000325 [list] [network] plant-type vacuole  (785 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2529 genes)  IDA ISM  
GO:0016020 [list] [network] membrane  (3629 genes)  TAS  
GO MF
KEGG
Protein NP_001331537.1  NP_001331538.1  NP_001331539.1  NP_001331540.1  NP_197067.2 
BLAST NP_001331537.1  NP_001331538.1  NP_001331539.1  NP_001331540.1  NP_197067.2 
Orthologous [Ortholog page] LOC4333114 (osa)  LOC4343845 (osa)  LOC7480591 (ppo)  LOC18105767 (ppo)  LOC18105768 (ppo)  LOC25495420 (mtr)  LOC25497597 (mtr)  LOC100783410 (gma)  LOC100784352 (gma)  LOC100798678 (gma)  LOC100805102 (gma)  LOC101253146 (sly)  LOC101260119 (sly)  LOC101260407 (sly)  LOC103847531 (bra)  LOC103850996 (bra)  LOC103856152 (bra)  LOC123052145 (tae)  LOC123102634 (tae)  LOC123110820 (tae)  LOC123119822 (tae)  LOC123185012 (tae)  LOC123398393 (hvu)  LOC123429721 (hvu)  LOC123442574 (hvu) 
Subcellular
localization
wolf
vacu 6,  golg 2,  extr 1,  golg_plas 1  (predict for NP_001331537.1)
nucl 4,  cyto 2,  cysk_nucl 2,  plas 1,  cyto_E.R. 1  (predict for NP_001331538.1)
nucl 3,  vacu 3,  chlo 1,  golg 1,  cyto_nucl 1,  cysk_nucl 1,  E.R._vacu 1  (predict for NP_001331539.1)
nucl 3,  vacu 3,  chlo 1,  golg 1,  cyto_nucl 1,  cysk_nucl 1,  E.R._vacu 1  (predict for NP_001331540.1)
vacu 4,  golg 3,  golg_plas 3,  plas 2  (predict for NP_197067.2)
Subcellular
localization
TargetP
scret 9  (predict for NP_001331537.1)
other 7  (predict for NP_001331538.1)
mito 7,  other 6  (predict for NP_001331539.1)
mito 7,  other 6  (predict for NP_001331540.1)
scret 9  (predict for NP_197067.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with IRX6 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
21.3 IRX3 Cellulose synthase family protein [detail] 831608
19.7 IRX1 cellulose synthase family protein [detail] 827612
19.4 CESA4 cellulose synthase A4 [detail] 834426
18.0 IRX9 Nucleotide-diphospho-sugar transferases superfamily protein [detail] 818285
17.8 GAUT12 galacturonosyltransferase 12 [detail] 835558
14.9 AT2G28315 Nucleotide/sugar transporter family protein [detail] 817378
13.6 MYB46 myb domain protein 46 [detail] 831127
13.0 TBL3 trichome birefringence-like protein (DUF828) [detail] 830298
12.5 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 [detail] 818625
12.5 GUT2 Exostosin family protein [detail] 839635
11.4 AT4G27435 fiber (DUF1218) [detail] 828852
9.7 AT1G13635 DNA glycosylase superfamily protein [detail] 2745751
9.5 AT1G08340 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein [detail] 837354
9.5 LAC2 laccase 2 [detail] 817462
7.7 AT1G66810 Zinc finger C-x8-C-x5-C-x3-H type family protein [detail] 842999
Coexpressed
gene list		 [Coexpressed gene list for IRX6]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246512_at
246512_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246512_at
246512_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246512_at
246512_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 831417      
Refseq ID (protein) NP_001331537.1 
NP_001331538.1 
NP_001331539.1 
NP_001331540.1 
NP_197067.2 


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