[←][→] ath   At5g18540 Gene
functional annotation
Function   E3 ubiquitin-protein ligase    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG
Protein NP_001031899.1  NP_001330086.1  NP_001330087.1  NP_197355.2 
BLAST NP_001031899.1  NP_001330086.1  NP_001330087.1  NP_197355.2 
Orthologous [Ortholog page] LOC4344234 (osa)  LOC18101839 (ppo)  LOC25488180 (mtr)  LOC100306299 (gma)  LOC100784500 (gma)  LOC101267737 (sly)  LOC103846208 (bra)  LOC103851179 (bra)  LOC123043776 (tae)  LOC123051640 (tae)  LOC123187565 (tae)  LOC123424788 (hvu) 
Subcellular
localization
wolf
nucl 8,  mito 1  (predict for NP_001031899.1)
mito 4,  nucl_plas 2,  nucl 2,  cyto_mito 2,  cyto 1,  plas 1  (predict for NP_001330086.1)
mito 4,  nucl_plas 2,  nucl 2,  cyto_mito 2,  cyto 1,  plas 1  (predict for NP_001330087.1)
nucl 7,  mito 2  (predict for NP_197355.2)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for NP_001031899.1)
other 7,  chlo 4  (predict for NP_001330086.1)
other 7,  chlo 4  (predict for NP_001330087.1)
other 7,  chlo 4  (predict for NP_197355.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
Genes directly connected with AT5G18540 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.9 AT1G17665 CA-responsive protein [detail] 838343
7.0 AT4G33980 uncharacterized protein [detail] 829544
6.9 GRP7 cold, circadian rhythm, and rna binding 2 [detail] 816705
5.6 AT5G30495 Fcf2 pre-rRNA processing protein [detail] 833073
5.3 AT1G54217 Ribosomal protein L18ae family [detail] 2745829
Coexpressed
gene list		 [Coexpressed gene list for AT5G18540]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249990_at
249990_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249990_at
249990_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249990_at
249990_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 831972      
Refseq ID (protein) NP_001031899.1 
NP_001330086.1 
NP_001330087.1 
NP_197355.2 


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