[←][→] ath   At5g22250 Gene
functional annotation
Function   Polynucleotidyl transferase, ribonuclease H-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0000289 [list] [network] nuclear-transcribed mRNA poly(A) tail shortening  (5 genes)  IMP  
GO:0042742 [list] [network] defense response to bacterium  (980 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0008408 [list] [network] 3'-5' exonuclease activity  (18 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_197617.1 
BLAST NP_197617.1 
Orthologous [Ortholog page] CAF1a (ath)  LOC4337457 (osa)  LOC7469961 (ppo)  LOC7485296 (ppo)  LOC18098097 (ppo)  LOC18102215 (ppo)  LOC100500357 (gma)  LOC100781759 (gma)  LOC100790027 (gma)  LOC100805583 (gma)  LOC100811298 (gma)  LOC100817875 (gma)  LOC101248130 (sly)  LOC101248416 (sly)  LOC101254325 (sly)  LOC101258270 (sly)  LOC101268737 (sly)  LOC103845561 (bra)  LOC103848067 (bra)  LOC103851429 (bra)  LOC103856505 (bra)  LOC107275402 (osa)  LOC112324964 (ppo)  LOC112416242 (mtr)  LOC112417479 (mtr)  LOC112417480 (mtr)  LOC112419485 (mtr)  LOC112419659 (mtr)  LOC112419688 (mtr)  LOC112421712 (mtr)  LOC112421767 (mtr)  LOC123047493 (tae)  LOC123055286 (tae)  LOC123082922 (tae)  LOC123152252 (tae)  LOC123152965 (tae)  LOC123168503 (tae)  LOC123191113 (tae)  LOC123408083 (hvu)  LOC123431274 (hvu) 
Subcellular
localization
wolf
cyto 8,  cyto_E.R. 4,  E.R._vacu 1  (predict for NP_197617.1)
Subcellular
localization
TargetP
other 8  (predict for NP_197617.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
Genes directly connected with CAF1b on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
13.1 CAF1a Polynucleotidyl transferase, ribonuclease H-like superfamily protein [detail] 823551
10.5 ERF11 ERF domain protein 11 [detail] 839733
10.2 RDUF2 zinc finger (C3HC4-type RING finger) family protein [detail] 836074
8.0 AT5G65300 uncharacterized protein [detail] 836655
7.0 AT1G03730 pyrroline-5-carboxylate reductase [detail] 839106
5.1 AT1G64065 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [detail] 2745848
Coexpressed
gene list		 [Coexpressed gene list for CAF1b]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249928_at
249928_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249928_at
249928_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249928_at
249928_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832285      
Refseq ID (protein) NP_197617.1 


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