[←][→] ath   At5g23420 Gene
functional annotation
Function   high-mobility group box 6    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0000741 [list] [network] karyogamy  (32 genes)  IMP  
GO:0010197 [list] [network] polar nucleus fusion  (32 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0003677 [list] [network] DNA binding  (1277 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  ISS  
KEGG
Protein NP_001190371.1  NP_568431.1 
BLAST NP_001190371.1  NP_568431.1 
Orthologous [Ortholog page] LOC4344416 (osa)  LOC7465590 (ppo)  LOC25485684 (mtr)  LOC100306558 (gma)  LOC100778215 (gma)  LOC100810345 (gma)  LOC101247008 (sly)  LOC103854899 (bra)  LOC103865488 (bra)  LOC123151273 (tae)  LOC123157306 (tae)  LOC123168925 (tae)  LOC123410844 (hvu) 
Subcellular
localization
wolf
nucl 4,  chlo 3,  plas 1,  chlo_mito 1  (predict for NP_001190371.1)
nucl 10  (predict for NP_568431.1)
Subcellular
localization
TargetP
chlo 5  (predict for NP_001190371.1)
chlo 6  (predict for NP_568431.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 5
ath03440 Homologous recombination 5
ath03420 Nucleotide excision repair 4
ath03430 Mismatch repair 4
Genes directly connected with HMGB6 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
14.8 RPA70D Replication factor-A protein 1-like protein [detail] 836221
13.8 RPA70B RPA70-kDa subunit B [detail] 830696
13.5 AT3G14740 RING/FYVE/PHD zinc finger superfamily protein [detail] 820702
12.3 AT3G12170 Chaperone DnaJ-domain superfamily protein [detail] 820394
8.8 AT5G63550 DEK domain-containing chromatin associated protein [detail] 836474
8.6 AT5G25580 uncharacterized protein [detail] 832633
4.8 AT5G05330 HMG-box (high mobility group) DNA-binding family protein [detail] 830415
Coexpressed
gene list		 [Coexpressed gene list for HMGB6]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249836_at
249836_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249836_at
249836_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249836_at
249836_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832408      
Refseq ID (protein) NP_001190371.1 
NP_568431.1 


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