[←][→] ath   At5g23880 Gene
functional annotation
Function   cleavage and polyadenylation specificity factor 100    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006378 [list] [network] mRNA polyadenylation  (8 genes)  ISS  
GO:0006379 [list] [network] mRNA cleavage  (9 genes)  ISS  
GO:0035194 [list] [network] RNA-mediated post-transcriptional gene silencing  (92 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (697 genes)  NAS  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (3 genes)  ISS NAS  
GO:0009506 [list] [network] plasmodesma  (871 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IDA  
GO MF
GO:0003677 [list] [network] DNA binding  (1277 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
Protein NP_197776.1 
BLAST NP_197776.1 
Orthologous [Ortholog page] LOC4347905 (osa)  LOC18095012 (ppo)  LOC25483257 (mtr)  LOC100777002 (gma)  LOC100796817 (gma)  LOC101254167 (sly)  LOC103874248 (bra)  LOC112327365 (ppo)  LOC123105511 (tae)  LOC123113814 (tae)  LOC123123322 (tae)  LOC123452843 (hvu) 
Subcellular
localization
wolf
cyto 6,  chlo 2,  nucl 1,  vacu 1  (predict for NP_197776.1)
Subcellular
localization
TargetP
other 8  (predict for NP_197776.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 7
ath03015 mRNA surveillance pathway 3
Genes directly connected with CPSF100 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.2 AT3G14120 nuclear pore complex protein [detail] 820629
9.1 SAR1 SUPPRESSOR OF AUXIN RESISTANCE1 [detail] 840234
8.5 AT3G56900 Transducin/WD40 repeat-like superfamily protein [detail] 824857
8.3 FY Transducin/WD40 repeat-like superfamily protein [detail] 831191
6.5 UK/UPRT1 uridine kinase/uracil phosphoribosyltransferase 1 [detail] 834088
Coexpressed
gene list		 [Coexpressed gene list for CPSF100]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249816_at
249816_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249816_at
249816_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249816_at
249816_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832453      
Refseq ID (protein) NP_197776.1 


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