[←][→] ath   AT5G28740 Gene
functional annotation
Function   Tetratricopeptide repeat (TPR)-like superfamily protein  
GO BP
GO:0000349 [list] [network] generation of catalytic spliceosome for first transesterification step  (1 genes)  IBA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO CC
GO:0071007 [list] [network] U2-type catalytic step 2 spliceosome  (8 genes)  IBA  
GO:0000974 [list] [network] Prp19 complex  (11 genes)  IBA  
GO:0071014 [list] [network] post-mRNA release spliceosomal complex  (12 genes)  IBA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (48 genes)  IBA  
GO:0009536 [list] [network] plastid  (5519 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_198226.1 
BLAST NP_198226.1 
Orthologous [Ortholog page] LOC4344088 (osa)  LOC7490793 (ppo)  LOC11434840 (mtr)  LOC100217127 (zma)  LOC100267056 (vvi)  LOC100384244 (zma)  LOC100781026 (gma)  LOC100810456 (gma)  LOC101268140 (sly)  LOC103854624 (bra) 
Subcellular
localization
wolf
cyto 7,  chlo 1,  nucl 1  (predict for NP_198226.1)
Subcellular
localization
TargetP
other 9  (predict for NP_198226.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 RNA transport 5
ath03040 Spliceosome 4
Genes directly connected with AT5G28740 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.4 EIF3C eukaryotic translation initiation factor 3C [detail] 824781
8.0 AT5G41770 crooked neck protein, putative / cell cycle protein [detail] 834182
7.6 ABCF4 general control non-repressible 4 [detail] 824619
7.5 AT2G34970 Trimeric LpxA-like enzyme [detail] 818061
7.5 FAS4 RNA helicase family protein [detail] 840232
Coexpressed
gene list		 [Coexpressed gene list for AT5G28740]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245917_at
245917_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245917_at
245917_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
245917_at
245917_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832986      
Refseq ID (protein) NP_198226.1 


The preparation time of this page was 0.5 [sec].