[←][→] ath   AT5G35400 Gene
functional annotation
Function   Pseudouridine synthase family protein  
GO BP
GO:0001522 [list] [network] pseudouridine synthesis  (21 genes)  IEA  
GO:0008033 [list] [network] tRNA processing  (94 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0106029 [list] [network] tRNA pseudouridine synthase activity  (2 genes)  IEA  
GO:0009982 [list] [network] pseudouridine synthase activity  (20 genes)  TAS  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
KEGG
Protein NP_001190423.1  NP_198390.2 
BLAST NP_001190423.1  NP_198390.2 
Orthologous [Ortholog page] LOC4341760 (osa)  LOC11438456 (mtr)  LOC100193161 (zma)  LOC100242086 (vvi)  LOC100789957 (gma)  LOC101257579 (sly)  LOC103833708 (bra) 
Subcellular
localization
wolf
cyto 2,  chlo_mito 2,  chlo 1,  mito 1,  cyto_nucl 1,  nucl 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001190423.1)
chlo 4,  chlo_mito 3,  cyto 2,  mito 1,  cyto_nucl 1  (predict for NP_198390.2)
Subcellular
localization
TargetP
mito 5,  other 3  (predict for NP_001190423.1)
mito 5,  other 3  (predict for NP_198390.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03013 RNA transport 2
Genes directly connected with AT5G35400 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
4.8 ABH1 ARM repeat superfamily protein [detail] 815840
4.5 AT4G15520 tRNA/rRNA methyltransferase (SpoU) family protein [detail] 827225
4.4 AT2G25100 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [detail] 817048
Coexpressed
gene list		 [Coexpressed gene list for AT5G35400]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246610_at
246610_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246610_at
246610_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246610_at
246610_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 833501      
Refseq ID (protein) NP_001190423.1 
NP_198390.2 


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