[←][→] ath   AT5G39550 Gene
functional annotation
Function   Zinc finger (C3HC4-type RING finger) family protein  
GO BP
GO:0090309 [list] [network] positive regulation of methylation-dependent chromatin silencing  (3 genes)  IMP  
GO:0010424 [list] [network] DNA methylation on cytosine within a CG sequence  (10 genes)  IMP  
GO:0032776 [list] [network] DNA methylation on cytosine  (13 genes)  IMP  
GO:0010216 [list] [network] maintenance of DNA methylation  (20 genes)  IBA  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (173 genes)  IMP  
GO:0006325 [list] [network] chromatin organization  (338 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (624 genes)  IBA IDA IEA  
GO CC
GO:0005720 [list] [network] nuclear heterochromatin  (12 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0010428 [list] [network] methyl-CpNpG binding  (4 genes)  IDA  
GO:0010429 [list] [network] methyl-CpNpN binding  (4 genes)  IDA  
GO:0008327 [list] [network] methyl-CpG binding  (16 genes)  IDA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (204 genes)  IBA  
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (434 genes)  IDA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG
Protein NP_198771.1 
BLAST NP_198771.1 
Orthologous [Ortholog page] VIM5 (ath)  VIM1 (ath)  VIM4 (ath)  VIM2 (ath)  LOC4337533 (osa)  LOC7496528 (ppo)  LOC9266770 (osa)  LOC11416728 (mtr)  LOC11419655 (mtr)  LOC100267660 (vvi)  LOC100384551 (zma)  LOC100501293 (zma)  LOC100781044 (gma)  LOC100786796 (gma)  LOC101264121 (sly)  LOC103632186 (zma)  LOC103831022 (bra) 
Subcellular
localization
wolf
nucl 9  (predict for NP_198771.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_198771.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03440 Homologous recombination 2
Genes directly connected with VIM3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.5 CHR1 chromatin remodeling 1 [detail] 836808
7.5 VIM1 Zinc finger (C3HC4-type RING finger) family protein [detail] 842157
7.4 CMT3 chromomethylase 3 [detail] 843313
4.0 ORTHL ORTHRUS-like protein [detail] 826420
Coexpressed
gene list		 [Coexpressed gene list for VIM3]
Gene expression
All samples [Expression pattern for all samples]
Link to other DBs
Entrez Gene ID 833951      
Refseq ID (protein) NP_198771.1 


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