[←][→] ath   At5g40250 Gene
functional annotation
Function   RING/U-box superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0016567 [list] [network] protein ubiquitination  (434 genes)  IEA  
GO:0048507 [list] [network] meristem development  (457 genes)  IEA  
GO:0009892 [list] [network] negative regulation of metabolic process  (1067 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG
Protein NP_198841.1 
BLAST NP_198841.1 
Orthologous [Ortholog page] AT1G23980 (ath)  LOC4330698 (osa)  LOC4340585 (osa)  LOC7457720 (ppo)  LOC7483485 (ppo)  LOC7496654 (ppo)  LOC11409570 (mtr)  LOC25495206 (mtr)  LOC25501278 (mtr)  LOC100779678 (gma)  LOC100787206 (gma)  LOC100789990 (gma)  LOC100794750 (gma)  LOC100805154 (gma)  RFP1 (gma)  LOC100807741 (gma)  LOC100818135 (gma)  LOC101247279 (sly)  LOC101251870 (sly)  LOC101256874 (sly)  LOC101260009 (sly)  LOC103835644 (bra)  LOC103840719 (bra)  LOC103850167 (bra)  LOC103863965 (bra)  LOC123149852 (tae)  LOC123157468 (tae)  LOC123165371 (tae)  LOC123409026 (hvu) 
Subcellular
localization
wolf
chlo 4,  nucl 2,  cysk_nucl 1,  cyto 1,  mito 1,  plas 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  E.R._plas 1,  mito_plas 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_198841.1)
Subcellular
localization
TargetP
other 6  (predict for NP_198841.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath03015 mRNA surveillance pathway 2
Genes directly connected with AT5G40250 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
4.7 AT2G17990 polyamine-modulated factor 1-binding protein [detail] 816311
4.6 AT1G15920 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [detail] 838162
4.5 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein [detail] 826726
Coexpressed
gene list		 [Coexpressed gene list for AT5G40250]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249398_at
249398_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249398_at
249398_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249398_at
249398_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834023      
Refseq ID (protein) NP_198841.1 


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