[←][→] ath   AT5G41770 Gene
functional annotation
Function   crooked neck protein, putative / cell cycle protein  
GO BP
GO:0000245 [list] [network] spliceosomal complex assembly  (17 genes)  IBA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO CC
GO:0071007 [list] [network] U2-type catalytic step 2 spliceosome  (8 genes)  IBA  
GO:0000974 [list] [network] Prp19 complex  (11 genes)  IBA  
GO:0071014 [list] [network] post-mRNA release spliceosomal complex  (12 genes)  IBA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (48 genes)  IBA  
GO:0009536 [list] [network] plastid  (5519 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_198992.2 
BLAST NP_198992.2 
Orthologous [Ortholog page] AT3G13210 (ath)  AT5G45990 (ath)  LOC4338298 (osa)  LOC7458229 (ppo)  LOC11426099 (mtr)  LOC11439028 (mtr)  LOC100255371 (vvi)  LOC100791616 (gma)  LOC100811745 (gma)  LOC101245441 (sly)  LOC101257538 (sly)  LOC101263580 (sly)  LOC103643760 (zma)  LOC103850228 (bra)  LOC103864120 (bra) 
Subcellular
localization
wolf
cyto 6,  nucl 2,  chlo 1,  cysk 1  (predict for NP_198992.2)
Subcellular
localization
TargetP
other 8  (predict for NP_198992.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
Genes directly connected with AT5G41770 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.3 AT3G26560 ATP-dependent RNA helicase [detail] 822264
8.0 AT5G28740 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 832986
7.3 ATO splicing factor-like protein [detail] 830503
7.2 HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein [detail] 821485
7.2 Hop1 stress-inducible protein [detail] 837781
6.0 AT5G38830 Cysteinyl-tRNA synthetase, class Ia family protein [detail] 833874
6.0 AT3G29310 calmodulin-binding protein-like protein [detail] 822589
Coexpressed
gene list		 [Coexpressed gene list for AT5G41770]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249269_at
249269_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249269_at
249269_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249269_at
249269_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834182      
Refseq ID (protein) NP_198992.2 


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