[←][→] ath   At5g42920 Gene
functional annotation
Function   THO complex, subunit 5    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0070918 [list] [network] regulatory ncRNA processing  (51 genes)  IEA  
GO:0035194 [list] [network] RNA-mediated post-transcriptional gene silencing  (92 genes)  IEA  
GO:0070647 [list] [network] protein modification by small protein conjugation or removal  (512 genes)  IEA  
GO:0048523 [list] [network] negative regulation of cellular process  (960 genes)  IEA  
GO CC
GO:0000347 [list] [network] THO complex  (14 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG ath03013 [list] [network] Nucleocytoplasmic transport (103 genes)
Protein NP_568616.1  NP_974873.1 
BLAST NP_568616.1  NP_974873.1 
Orthologous [Ortholog page] LOC4330841 (osa)  LOC7464925 (ppo)  LOC11433389 (mtr)  LOC100775509 (gma)  LOC100816115 (gma)  LOC101252484 (sly)  LOC103828006 (bra)  LOC123128578 (tae)  LOC123138448 (tae)  LOC123145697 (tae)  LOC123404583 (hvu) 
Subcellular
localization
wolf
nucl 7,  cyto 3  (predict for NP_568616.1)
nucl 8,  chlo 1,  cyto 1,  vacu 1  (predict for NP_974873.1)
Subcellular
localization
TargetP
other 8  (predict for NP_568616.1)
other 8  (predict for NP_974873.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
ath03040 Spliceosome 2
Genes directly connected with THO5 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.2 JMJ14 JUMONJI 14 [detail] 827788
5.8 AT4G32910 nuclear pore complex Nup85-like protein [detail] 829427
5.7 MEE22 maternal effect embryo arrest 22 [detail] 818043
Coexpressed
gene list		 [Coexpressed gene list for THO5]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249181_at
249181_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249181_at
249181_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249181_at
249181_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834304      
Refseq ID (protein) NP_568616.1 
NP_974873.1 


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