[←][→] ath   At5g48240 Gene
functional annotation
Function   Rrp15p protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006364 [list] [network] rRNA processing  (169 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG
Protein NP_001119396.1  NP_001154769.1  NP_199635.2 
BLAST NP_001119396.1  NP_001154769.1  NP_199635.2 
Orthologous [Ortholog page] LOC4350250 (osa)  LOC7456019 (ppo)  LOC100780091 (gma)  LOC100817676 (gma)  LOC101255093 (sly)  LOC103837243 (bra)  LOC103874938 (bra)  LOC120579661 (mtr)  LOC123109047 (tae)  LOC123180273 (tae)  LOC123189482 (tae)  LOC123405479 (hvu)  LOC123412014 (hvu) 
Subcellular
localization
wolf
nucl 9,  cyto 1,  mito 1  (predict for NP_001119396.1)
nucl 9  (predict for NP_001154769.1)
nucl 9  (predict for NP_199635.2)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for NP_001119396.1)
other 7,  chlo 4  (predict for NP_001154769.1)
other 7,  chlo 4  (predict for NP_199635.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
Genes directly connected with AT5G48240 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.9 AT1G29320 Transducin/WD40 repeat-like superfamily protein [detail] 839806
10.7 AT5G66540 U3 small nucleolar ribonucleoprotein [detail] 836786
10.7 AT3G23620 Ribosomal RNA processing Brix domain protein [detail] 821942
7.5 AT2G42650 Ribosomal protein L1p/L10e family [detail] 818865
Coexpressed
gene list		 [Coexpressed gene list for AT5G48240]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248743_at
248743_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248743_at
248743_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248743_at
248743_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834877      
Refseq ID (protein) NP_001119396.1 
NP_001154769.1 
NP_199635.2 


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