[←][→] ath   At5g49540 Gene
functional annotation
Function   Rab5-interacting family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0051603 [list] [network] proteolysis involved in protein catabolic process  (247 genes)  IEA  
GO CC
GO MF
KEGG
Protein NP_001331350.1  NP_568710.1 
BLAST NP_001331350.1  NP_568710.1 
Orthologous [Ortholog page] LOC4324140 (osa)  LOC7485845 (ppo)  LOC7485884 (ppo)  LOC11408789 (mtr)  LOC11424567 (mtr)  LOC100306269 (gma)  LOC100306572 (gma)  LOC100526986 (gma)  LOC101268716 (sly)  LOC103837291 (bra)  LOC103874615 (bra)  LOC123067141 (tae)  LOC123144559 (tae)  LOC123182989 (tae)  LOC123449578 (hvu) 
Subcellular
localization
wolf
vacu 5,  golg 3,  plas 1  (predict for NP_001331350.1)
vacu 5,  golg 3,  plas 1  (predict for NP_568710.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001331350.1)
other 9  (predict for NP_568710.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 3
ath00510 N-Glycan biosynthesis 2
ath00513 Various types of N-glycan biosynthesis 2
Genes directly connected with AT5G49540 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.9 AT1G77350 keratinocyte-associated-like protein [detail] 844071
7.7 AT5G54750 Transport protein particle (TRAPP) component [detail] 835565
7.7 AT1G80500 SNARE-like superfamily protein [detail] 844389
7.4 AT5G59410 Rab5-interacting family protein [detail] 836060
6.8 PEX4 peroxin4 [detail] 832645
5.6 AT3G12180 Cornichon family protein [detail] 820395
Coexpressed
gene list		 [Coexpressed gene list for AT5G49540]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248588_at
248588_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248588_at
248588_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248588_at
248588_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835015      
Refseq ID (protein) NP_001331350.1 
NP_568710.1 


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