[←][→] ath   AT5G52850 Gene
functional annotation
Function   Pentatricopeptide repeat (PPR) superfamily protein  
GO BP
GO:0009451 [list] [network] RNA modification  (403 genes)  IBA  
GO CC
GO:0005739 [list] [network] mitochondrion  (4405 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
KEGG
Protein NP_200097.1 
BLAST NP_200097.1 
Orthologous [Ortholog page] LOC4334879 (osa)  LOC7468352 (ppo)  LOC11414844 (mtr)  LOC100254325 (vvi)  LOC100791770 (gma)  LOC103644348 (zma)  LOC103844759 (bra) 
Subcellular
localization
wolf
chlo 9  (predict for NP_200097.1)
Subcellular
localization
TargetP
chlo 5,  scret 4  (predict for NP_200097.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT5G52850 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
15.2 AT1G56690 Pentatricopeptide repeat (PPR) superfamily protein [detail] 842125
13.8 AT4G35130 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 829665
13.7 AT3G58590 Pentatricopeptide repeat (PPR) superfamily protein [detail] 825028
13.1 AT3G13880 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 820601
12.9 AT4G39530 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 830107
12.1 OTP81 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 817526
12.1 AT4G02750 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 828187
11.8 AT3G03580 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 821229
11.4 AT5G39350 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 833931
11.4 AT3G11460 Pentatricopeptide repeat (PPR) superfamily protein [detail] 820319
11.2 emb1692 Ubiquitin carboxyl-terminal hydrolase family protein [detail] 836419
11.1 AT1G20230 Pentatricopeptide repeat (PPR) superfamily protein [detail] 838612
11.0 AT4G37170 Pentatricopeptide repeat (PPR) superfamily protein [detail] 829871
10.9 AT4G33170 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 829454
10.8 AT3G58520 Ubiquitin carboxyl-terminal hydrolase family protein [detail] 825021
10.7 MEF18 mitochondrial editing factor 18 [detail] 832021
10.7 AT1G13410 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 837901
10.6 AT3G49142 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 10723034
10.5 DOT4 Pentatricopeptide repeat (PPR) superfamily protein [detail] 827609
10.5 AT4G38010 Pentatricopeptide repeat (PPR-like) superfamily protein [detail] 829957
10.4 AT5G61370 Pentatricopeptide repeat (PPR) superfamily protein [detail] 836258
10.4 AT3G23330 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 821914
10.0 RARE1 Pentatricopeptide repeat (PPR) superfamily protein [detail] 831168
9.8 AT5G56310 Pentatricopeptide repeat (PPR) superfamily protein [detail] 835730
9.5 AT5G39980 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 833995
9.5 AT3G49710 Pentatricopeptide repeat (PPR) superfamily protein [detail] 824133
9.3 AT3G23020 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 821876
9.3 AT3G25970 Pentatricopeptide repeat (PPR) superfamily protein [detail] 822194
8.3 EMB2758 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 829546
8.2 AT1G71460 Pentatricopeptide repeat (PPR-like) superfamily protein [detail] 843487
7.9 AT1G16480 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 838218
7.8 AT4G13650 Pentatricopeptide repeat (PPR) superfamily protein [detail] 826999
7.5 OTP87 pentatricopeptide (PPR) repeat-containing protein [detail] 843800
7.5 AT3G47530 Pentatricopeptide repeat (PPR) superfamily protein [detail] 823907
7.4 AT5G61940 Ubiquitin carboxyl-terminal hydrolase-related protein [detail] 836315
7.3 AT5G04780 Pentatricopeptide repeat (PPR) superfamily protein [detail] 830356
6.7 CRR2 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 823832
6.3 CRR22 Pentatricopeptide repeat (PPR) superfamily protein [detail] 837671
6.2 AT1G61400 S-locus lectin protein kinase family protein [detail] 842434
6.1 APPR6 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 844072
6.1 AT1G56130 Leucine-rich repeat transmembrane protein kinase [detail] 842065
5.7 AT5G45780 Leucine-rich repeat protein kinase family protein [detail] 834618
5.7 APO4 APO RNA-binding protein (DUF794) [detail] 821728
5.7 AT5G47510 Sec14p-like phosphatidylinositol transfer family protein [detail] 834801
Coexpressed
gene list		 [Coexpressed gene list for AT5G52850]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248307_at
248307_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248307_at
248307_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248307_at
248307_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835362      
Refseq ID (protein) NP_200097.1 


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