functional annotation |
Function |
light-harvesting chlorophyll B-binding protein 3 |
|
GO BP |
GO:0009769 [list] [network] photosynthesis, light harvesting in photosystem II
|
(6 genes)
|
IMP
|
|
GO:0009635 [list] [network] response to herbicide
|
(13 genes)
|
IEP
|
|
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I
|
(21 genes)
|
IBA
|
|
GO:0018298 [list] [network] protein-chromophore linkage
|
(38 genes)
|
IEA
|
|
GO:0009644 [list] [network] response to high light intensity
|
(65 genes)
|
IEP
|
|
GO:0010119 [list] [network] regulation of stomatal movement
|
(88 genes)
|
IMP
|
|
GO:0015979 [list] [network] photosynthesis
|
(206 genes)
|
IMP
|
|
GO:0009737 [list] [network] response to abscisic acid
|
(574 genes)
|
IMP
|
|
GO:0009416 [list] [network] response to light stimulus
|
(700 genes)
|
IBA
|
|
|
GO CC |
|
GO MF |
GO:0016168 [list] [network] chlorophyll binding
|
(27 genes)
|
IEA
|
|
GO:0046872 [list] [network] metal ion binding
|
(3180 genes)
|
IEA
|
|
GO:0005515 [list] [network] protein binding
|
(4605 genes)
|
IPI
|
|
|
KEGG |
ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes) |
|
Protein |
NP_200238.1
|
BLAST |
NP_200238.1
|
Orthologous |
[Ortholog page]
LOC4343604 (osa)
LOC11405314 (mtr)
LOC100251653 (vvi)
LOC100260599 (vvi)
LOC100284154 (zma)
LOC100779387 (gma)
LOC100790960 (gma)
LOC100854348 (vvi)
CAB13 (sly)
LOC101268123 (sly)
LOC103844887 (bra)
|
Subcellular localization wolf |
chlo 6,
mito 1,
nucl 1,
extr 1,
E.R. 1,
cyto_mito 1,
mito_plas 1
|
(predict for NP_200238.1)
|
|
Subcellular localization TargetP |
chlo 7
|
(predict for NP_200238.1)
|
|
Gene coexpression |
Network*for coexpressed genes |
KEGG* ID |
Title |
#genes |
Link to the KEGG* map (Multiple genes) |
ath00196 |
Photosynthesis - antenna proteins |
11 |
|
ath00195 |
Photosynthesis |
4 |
|
Genes directly connected with LHCB3 on the network
coex z* |
Locus |
Function* |
Coexpression detail |
Entrez Gene ID* |
23.5 |
LHCA4 |
light-harvesting chlorophyll-protein complex I subunit A4 |
[detail] |
823901 |
22.8 |
LHCA1 |
chlorophyll a-b binding protein 6 |
[detail] |
824654 |
21.8 |
LHCA3 |
PSI type III chlorophyll a/b-binding protein |
[detail] |
842446 |
21.5 |
LHCB5 |
light harvesting complex of photosystem II 5 |
[detail] |
826626 |
19.2 |
LHCB6 |
light harvesting complex photosystem II subunit 6 |
[detail] |
838151 |
16.4 |
LHCB2.2 |
photosystem II light harvesting complex protein 2.2 |
[detail] |
815055 |
15.7 |
CAB2 |
chlorophyll A/B-binding protein 2 |
[detail] |
839870 |
15.0 |
LHCB4.2 |
light harvesting complex photosystem II |
[detail] |
820043 |
13.3 |
LHCB2.1 |
photosystem II light harvesting complex protein 2.1 |
[detail] |
815058 |
12.8 |
CRD1 |
dicarboxylate diiron protein, putative (Crd1) |
[detail] |
824861 |
12.2 |
AT5G19940 |
Plastid-lipid associated protein PAP / fibrillin family protein |
[detail] |
832116 |
11.6 |
AT2G42220 |
Rhodanese/Cell cycle control phosphatase superfamily protein |
[detail] |
818822 |
8.4 |
AT1G05207 |
|
[detail] |
28716268 |
7.2 |
AT5G39530 |
hypothetical protein (DUF1997) |
[detail] |
833949 |
6.8 |
AT3G55240 |
Plant protein 1589 of unknown function |
[detail] |
824690 |
|
Coexpressed gene list |
[Coexpressed gene list for LHCB3]
|
Gene expression |
All samples |
[Expression pattern for all samples]
|
AtGenExpress* (Development) |
248151_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress* (Stress) |
248151_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress* (Hormone) |
248151_at
X axis is samples (xls file), and Y axis is log-expression.
|