[][] ath   AT5G54270 Gene
functional annotation
Function   light-harvesting chlorophyll B-binding protein 3
GO BP
GO:0009769 [list] [network] photosynthesis, light harvesting in photosystem II  (6 genes)  IMP  
GO:0009635 [list] [network] response to herbicide  (13 genes)  IEP  
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I  (21 genes)  IBA  
GO:0018298 [list] [network] protein-chromophore linkage  (38 genes)  IEA  
GO:0009644 [list] [network] response to high light intensity  (65 genes)  IEP  
GO:0010119 [list] [network] regulation of stomatal movement  (88 genes)  IMP  
GO:0015979 [list] [network] photosynthesis  (206 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (574 genes)  IMP  
GO:0009416 [list] [network] response to light stimulus  (700 genes)  IBA  
GO CC
GO:0009517 [list] [network] PSII associated light-harvesting complex II  (7 genes)  IDA  
GO:0009522 [list] [network] photosystem I  (35 genes)  IEA  
GO:0009523 [list] [network] photosystem II  (52 genes)  IEA  
GO:0010287 [list] [network] plastoglobule  (68 genes)  IBA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (373 genes)  IBA IDA  
GO:0042651 [list] [network] thylakoid membrane  (391 genes)  IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (474 genes)  IDA  
GO:0009579 [list] [network] thylakoid  (543 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (666 genes)  IBA  
GO:0016021 [list] [network] integral component of membrane  (4803 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA ISM  
GO:0009536 [list] [network] plastid  (5519 genes)  HDA  
GO MF
GO:0016168 [list] [network] chlorophyll binding  (27 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
Protein NP_200238.1 
BLAST NP_200238.1 
Orthologous [Ortholog page] LOC4343604 (osa)LOC11405314 (mtr)LOC100251653 (vvi)LOC100260599 (vvi)LOC100284154 (zma)LOC100779387 (gma)LOC100790960 (gma)LOC100854348 (vvi)CAB13 (sly)LOC101268123 (sly)LOC103844887 (bra)
Subcellular
localization
wolf
chlo 6,  mito 1,  nucl 1,  extr 1,  E.R. 1,  cyto_mito 1,  mito_plas 1  (predict for NP_200238.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_200238.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 11
ath00195 Photosynthesis 4
Genes directly connected with LHCB3 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
23.5 LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 [detail] 823901
22.8 LHCA1 chlorophyll a-b binding protein 6 [detail] 824654
21.8 LHCA3 PSI type III chlorophyll a/b-binding protein [detail] 842446
21.5 LHCB5 light harvesting complex of photosystem II 5 [detail] 826626
19.2 LHCB6 light harvesting complex photosystem II subunit 6 [detail] 838151
16.4 LHCB2.2 photosystem II light harvesting complex protein 2.2 [detail] 815055
15.7 CAB2 chlorophyll A/B-binding protein 2 [detail] 839870
15.0 LHCB4.2 light harvesting complex photosystem II [detail] 820043
13.3 LHCB2.1 photosystem II light harvesting complex protein 2.1 [detail] 815058
12.8 CRD1 dicarboxylate diiron protein, putative (Crd1) [detail] 824861
12.2 AT5G19940 Plastid-lipid associated protein PAP / fibrillin family protein [detail] 832116
11.6 AT2G42220 Rhodanese/Cell cycle control phosphatase superfamily protein [detail] 818822
8.4 AT1G05207 [detail] 28716268
7.2 AT5G39530 hypothetical protein (DUF1997) [detail] 833949
6.8 AT3G55240 Plant protein 1589 of unknown function [detail] 824690
Coexpressed
gene list
[Coexpressed gene list for LHCB3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248151_at
248151_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248151_at
248151_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
248151_at
248151_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 835515    
Refseq ID (protein) NP_200238.1 


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