[←][→] ath   AT5G55580 Gene
functional annotation
Function   Mitochondrial transcription termination factor family protein  
GO BP
GO:0006353 [list] [network] DNA-templated transcription, termination  (19 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (194 genes)  IMP  
GO:0048364 [list] [network] root development  (482 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (485 genes)  IMP  
GO:0048367 [list] [network] shoot system development  (812 genes)  IMP  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  IEA  
GO:0032502 [list] [network] developmental process  (3194 genes)  IBA  
GO CC
GO:0005739 [list] [network] mitochondrion  (4405 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA ISM  
GO MF
GO:0003690 [list] [network] double-stranded DNA binding  (343 genes)  IEA  
KEGG
Protein NP_001330153.1  NP_001330154.1  NP_200369.1 
BLAST NP_001330153.1  NP_001330154.1  NP_200369.1 
Orthologous [Ortholog page] LOC4343734 (osa)  LOC7485086 (ppo)  LOC11425995 (mtr)  LOC100260706 (vvi)  LOC100285943 (zma)  LOC100809638 (gma)  LOC101267870 (sly)  LOC102660933 (gma)  LOC103856978 (bra) 
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  extr 1,  pero 1,  chlo_mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001330153.1)
nucl 7,  cyto 3  (predict for NP_001330154.1)
cyto 8,  chlo 1,  nucl 1,  pero 1  (predict for NP_200369.1)
Subcellular
localization
TargetP
chlo 3  (predict for NP_001330153.1)
other 8  (predict for NP_001330154.1)
chlo 3  (predict for NP_200369.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
Genes directly connected with AT5G55580 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.2 AT3G02060 DEAD/DEAH box helicase [detail] 821294
6.6 SCA3 DNA/RNA polymerases superfamily protein [detail] 816946
6.5 emb1138 DEAD box RNA helicase (RH3) [detail] 832713
Coexpressed
gene list		 [Coexpressed gene list for AT5G55580]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248065_at
248065_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248065_at
248065_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248065_at
248065_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835652      
Refseq ID (protein) NP_001330153.1 
NP_001330154.1 
NP_200369.1 


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