[←][→] ath   At5g59560 Gene
functional annotation
Function   sensitivity to red light reduced protein (SRR1)    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009585 [list] [network] red, far-red light phototransduction  (20 genes)  IMP  
GO:0010017 [list] [network] red or far-red light signaling pathway  (52 genes)  IMP  
GO:0042752 [list] [network] regulation of circadian rhythm  (61 genes)  IMP  
GO:0007623 [list] [network] circadian rhythm  (123 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IDA  
GO MF
KEGG
Protein NP_200764.1  NP_851224.1 
BLAST NP_200764.1  NP_851224.1 
Orthologous [Ortholog page] LOC4337632 (osa)  LOC7462785 (ppo)  LOC7476849 (ppo)  LOC11419761 (mtr)  LOC100798856 (gma)  LOC100812408 (gma)  LOC101260783 (sly)  LOC103845377 (bra)  LOC103851571 (bra)  LOC123086733 (tae)  LOC123106849 (tae)  LOC123180134 (tae)  LOC123188377 (tae)  LOC123398381 (hvu) 
Subcellular
localization
wolf
nucl 8,  cyto_nucl 5,  cyto 1  (predict for NP_200764.1)
nucl 8,  cyto_nucl 5,  cyto 1  (predict for NP_851224.1)
Subcellular
localization
TargetP
other 8  (predict for NP_200764.1)
other 8  (predict for NP_851224.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with SRR1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.0 VRN5 Fibronectin type III domain-containing protein [detail] 822034
5.6 AT1G64580 Pentatricopeptide repeat (PPR) superfamily protein [detail] 842766
5.5 AT4G33890 transcriptional regulator of RNA polII, SAGA, subunit [detail] 829532
4.3 AT3G50620 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 824225
Coexpressed
gene list		 [Coexpressed gene list for SRR1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247703_at
247703_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247703_at
247703_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247703_at
247703_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836075      
Refseq ID (protein) NP_200764.1 
NP_851224.1 


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