[←][→] ath   AT5G60960 Gene
functional annotation
Function   Pentatricopeptide repeat (PPR) superfamily protein  
GO BP
GO:0006417 [list] [network] regulation of translation  (146 genes)  IEA  
GO CC
GO:0005759 [list] [network] mitochondrial matrix  (143 genes)  IEA  
GO:0005739 [list] [network] mitochondrion  (4405 genes)  IBA IDA ISM  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_200904.1 
BLAST NP_200904.1 
Orthologous [Ortholog page] LOC4343842 (osa)  LOC11442426 (mtr)  LOC100262070 (vvi)  LOC100274849 (zma)  LOC100782387 (gma)  LOC100808101 (gma)  LOC101259522 (sly)  LOC103860557 (bra) 
Subcellular
localization
wolf
chlo 6,  chlo_mito 5,  mito 3  (predict for NP_200904.1)
Subcellular
localization
TargetP
chlo 6,  mito 6  (predict for NP_200904.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
ath03008 Ribosome biogenesis in eukaryotes 2
Genes directly connected with PNM1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.5 PPR336 pentatricopeptide repeat 336 [detail] 842484
10.3 AT3G58660 Ribosomal protein L1p/L10e family [detail] 825035
9.6 SWA1 transducin family protein / WD-40 repeat family protein [detail] 819411
9.3 AT2G37230 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 818300
9.0 AT1G60770 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 842371
7.1 NFD5 pentatricopeptide (PPR) repeat-containing protein [detail] 838538
Coexpressed
gene list		 [Coexpressed gene list for PNM1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247607_at
247607_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247607_at
247607_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247607_at
247607_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836217      
Refseq ID (protein) NP_200904.1 


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