[←][→] ath   AT5G61140 Gene
functional annotation
Function   U5 small nuclear ribonucleoprotein helicase  
GO BP
GO:0008380 [list] [network] RNA splicing  (272 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (75 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
KEGG
Protein NP_001190584.1  NP_200922.2 
BLAST NP_001190584.1  NP_200922.2 
Orthologous [Ortholog page] LOC4332045 (osa)  LOC11425401 (mtr)  LOC100251846 (vvi)  LOC100811503 (gma)  LOC101260947 (sly)  LOC103639442 (zma)  LOC103854936 (bra) 
Subcellular
localization
wolf
chlo 8,  nucl 1,  cyto 1,  mito 1,  cyto_nucl 1  (predict for NP_001190584.1)
chlo 9,  nucl 1,  mito 1  (predict for NP_200922.2)
Subcellular
localization
TargetP
mito 5,  chlo 5  (predict for NP_001190584.1)
mito 5,  chlo 5  (predict for NP_200922.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with AT5G61140 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
13.1 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein [detail] 816303
12.3 SYD P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 817375
11.8 AT5G23110 Zinc finger, C3HC4 type (RING finger) family protein [detail] 832375
9.5 RST1 ARM repeat superfamily protein [detail] 822389
8.8 AT1G58060 RNA helicase family protein [detail] 842173
8.6 ATM Serine/Threonine-kinase ATM-like protein [detail] 823975
8.5 AT4G32820 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 829418
8.3 AT3G04490 exportin-4 protein [detail] 819605
7.3 DCL2 dicer-like 2 [detail] 821300
7.0 XDH1 xanthine dehydrogenase 1 [detail] 829641
Coexpressed
gene list		 [Coexpressed gene list for AT5G61140]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247564_at
247564_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247564_at
247564_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247564_at
247564_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836235      
Refseq ID (protein) NP_001190584.1 
NP_200922.2 


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