[←][→] ath   AT5G63110 Gene
functional annotation
Function   histone deacetylase 6  
GO BP
GO:0070933 [list] [network] histone H4 deacetylation  (3 genes)  IBA  
GO:0070932 [list] [network] histone H3 deacetylation  (5 genes)  IBA  
GO:0016575 [list] [network] histone deacetylation  (33 genes)  IMP  
GO:0010431 [list] [network] seed maturation  (56 genes)  IMP  
GO:0016441 [list] [network] posttranscriptional gene silencing  (138 genes)  IMP  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (173 genes)  IMP  
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (206 genes)  IBA  
GO:0016458 [list] [network] gene silencing  (216 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (485 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (547 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (574 genes)  IMP  
GO CC
GO:0000118 [list] [network] histone deacetylase complex  (13 genes)  IBA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IEA  
GO:0009941 [list] [network] chloroplast envelope  (666 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0032041 [list] [network] NAD-dependent histone deacetylase activity (H3-K14 specific)  (12 genes)  IEA  
GO:0004407 [list] [network] histone deacetylase activity  (35 genes)  IBA IMP ISS  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_201116.1 
BLAST NP_201116.1 
Orthologous [Ortholog page] HDA108 (zma)  HDA7 (ath)  LOC4345332 (osa)  LOC7453794 (ppo)  LOC7456903 (ppo)  LOC11414050 (mtr)  LOC100244903 (vvi)  HDA3 (gma)  HDA7 (gma)  HDA16 (gma)  LOC101256864 (sly)  HDA3 (sly)  LOC103837453 (bra)  LOC103873162 (bra)  LOC103873164 (bra)  LOC103873565 (bra)  LOC103873731 (bra) 
Subcellular
localization
wolf
nucl 6,  cyto_nucl 4,  cyto 2  (predict for NP_201116.1)
Subcellular
localization
TargetP
other 9  (predict for NP_201116.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03013 RNA transport 2
Genes directly connected with HDA6 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.8 AT2G47970 Nuclear pore localization protein NPL4 [detail] 819409
7.4 HD1 histone deacetylase 1 [detail] 829969
6.7 ELF7 hydroxyproline-rich glycoprotein family protein [detail] 844312
5.7 DGS1 dgd1 suppressor 1 [detail] 831104
Coexpressed
gene list		 [Coexpressed gene list for HDA6]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247371_at
247371_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247371_at
247371_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247371_at
247371_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836431      
Refseq ID (protein) NP_201116.1 


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