[←][→] ath   At5g63670 Gene
functional annotation
Function   SPT4 homolog 2      
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (429 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03250 [list] [network] Viral life cycle - HIV-1 (39 genes)
Protein NP_001190609.1  NP_568976.1 
BLAST NP_001190609.1  NP_568976.1 
Orthologous [Ortholog page] AT5G08565 (ath)  LOC4343956 (osa)  LOC7454302 (ppo)  LOC11430820 (mtr)  LOC11444230 (mtr)  LOC100306659 (gma)  LOC100812057 (gma)  LOC101248963 (sly)  LOC103855061 (bra)  LOC103855801 (bra)  LOC123044151 (tae)  LOC123052028 (tae)  LOC123187897 (tae)  LOC123425238 (hvu) 
Subcellular
localization
wolf
cyto 8,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for NP_001190609.1)
cyto 5,  chlo 3,  cyto_nucl 3,  cyto_plas 3  (predict for NP_568976.1)
Subcellular
localization
TargetP
mito 4,  other 3  (predict for NP_001190609.1)
other 4,  mito 3  (predict for NP_568976.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03020 RNA polymerase 2
Genes directly connected with SPT42 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.2 AT5G01650 Tautomerase/MIF superfamily protein [detail] 831707
7.4 AT4G38490 uncharacterized protein [detail] 830005
6.2 SAP18 SIN3 associated polypeptide P18 [detail] 819172
6.0 U1A spliceosomal protein U1A [detail] 819371
Coexpressed
gene list		 [Coexpressed gene list for SPT42]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247355_at
247355_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247355_at
247355_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247355_at
247355_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836487      
Refseq ID (protein) NP_001190609.1 
NP_568976.1 


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