ATTED-II : GeneID search result

[←][→] ath At5g64520 Gene

functional annotation

Function

homolog of X-ray repair cross complementing 2 (XRCC2)

GO BP

GO:0000724 [list] [network] double-strand break repair via homologous recombination	(40 genes)	IEA IMP
GO:0007131 [list] [network] reciprocal meiotic recombination	(41 genes)	IMP

GO CC

GO:0005657 [list] [network] replication fork	(2 genes)	IEA
GO:0033063 [list] [network] Rad51B-Rad51C-Rad51D-XRCC2 complex	(2 genes)	IEA
GO:0005634 [list] [network] nucleus	(10305 genes)	ISM

GO MF

GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity	(11 genes)	IEA
GO:0005524 [list] [network] ATP binding	(253 genes)	IEA
GO:0003677 [list] [network] DNA binding	(1277 genes)	IEA

KEGG

ath03440 [list] [network] Homologous recombination (60 genes)

Protein

NP_001318876.1 NP_001330642.1 NP_001330643.1 NP_001330644.1 NP_001330645.1 NP_001330646.1 NP_001330647.1 NP_001330648.1 NP_001330649.1 NP_201257.2 NP_851268.1

BLAST

NP_001318876.1 NP_001330642.1 NP_001330643.1 NP_001330644.1 NP_001330645.1 NP_001330646.1 NP_001330647.1 NP_001330648.1 NP_001330649.1 NP_201257.2 NP_851268.1

Orthologous

[Ortholog page] LOC25492821 (mtr) LOC100807727 (gma) LOC100818578 (gma) LOC101255234 (sly) LOC103837530 (bra) LOC123057050 (tae) LOC123071568 (tae) LOC123079905 (tae) LOC123444783 (hvu)

Subcellular
localization
wolf

cyto 6, nucl 4	(predict for NP_001318876.1)
cyto 6, nucl 4	(predict for NP_001330642.1)
cyto 6, nucl 4	(predict for NP_001330643.1)
cyto 6, nucl 4	(predict for NP_001330644.1)
cyto 5, nucl 4	(predict for NP_001330645.1)
nucl 5, cyto 3, chlo 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001330646.1)
cyto 6, nucl 4	(predict for NP_001330647.1)
cyto 5, nucl 4	(predict for NP_001330648.1)
cyto 5, nucl 3, cyto_pero 3	(predict for NP_001330649.1)
cyto 5, nucl 4, chlo 1, extr 1	(predict for NP_201257.2)
cyto 6, nucl 4	(predict for NP_851268.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001318876.1)
other 8	(predict for NP_001330642.1)
other 8	(predict for NP_001330643.1)
other 8	(predict for NP_001330644.1)
other 8	(predict for NP_001330645.1)
other 8	(predict for NP_001330646.1)
other 8	(predict for NP_001330647.1)
other 8	(predict for NP_001330648.1)
other 8	(predict for NP_001330649.1)
other 8	(predict for NP_201257.2)
other 8	(predict for NP_851268.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with XRCC2 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
5.2	AT5G08340	Nucleotidylyl transferase superfamily protein	[detail]	830732
5.1	AT1G73875	DNAse I-like superfamily protein	[detail]	843724
5.1	AT3G60310	acyl-CoA synthetase family protein	[detail]	825202
4.6	AT1G72530	plastid developmental protein DAG	[detail]	843585
4.6	BPC5	basic pentacysteine 5	[detail]	830046
4.5	AT1G16825	Reticulon family protein	[detail]	7922362

Coexpressed
gene list

[Coexpressed gene list for XRCC2]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

247294_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

247294_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

247294_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	836573
Refseq ID (protein)	NP_001318876.1
	NP_001330642.1
	NP_001330643.1
	NP_001330644.1
	NP_001330645.1
	NP_001330646.1
	NP_001330647.1
	NP_001330648.1
	NP_001330649.1
	NP_201257.2
	NP_851268.1

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