[←][→] ath   AT3G10920 Gene
functional annotation
Function   manganese superoxide dismutase 1  
GO BP
GO:0019430 [list] [network] removal of superoxide radicals  (11 genes)  IC  
GO:0010043 [list] [network] response to zinc ion  (42 genes)  IEP  
GO:0042742 [list] [network] defense response to bacterium  (399 genes)  IEP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (547 genes)  IMP  
GO:0055114 [list] [network] oxidation-reduction process  (1468 genes)  IEA  
GO CC
GO:0005759 [list] [network] mitochondrial matrix  (143 genes)  IEA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4405 genes)  IDA ISM NAS  
GO MF
GO:0004784 [list] [network] superoxide dismutase activity  (9 genes)  IDA  
GO:0005507 [list] [network] copper ion binding  (185 genes)  IDA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IDA  
KEGG ath04146 [list] [network] Peroxisome (87 genes)
Protein NP_001030670.1  NP_187703.1 
BLAST NP_001030670.1  NP_187703.1 
Orthologous [Ortholog page] LOC542764 (zma)  LOC4338417 (osa)  LOC7455231 (ppo)  LOC7477763 (ppo)  LOC25489848 (mtr)  LOC100101896 (gma)  LOC100193398 (zma)  MNSOD (vvi)  LOC100785490 (gma)  LOC101256386 (sly)  MSD1 (bra)  LOC103870420 (bra) 
Subcellular
localization
wolf
mito 8,  chlo 1  (predict for NP_001030670.1)
mito 7,  chlo 2  (predict for NP_187703.1)
Subcellular
localization
TargetP
mito 7  (predict for NP_001030670.1)
mito 7  (predict for NP_187703.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 9
Genes directly connected with MSD1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.3 ATP5 delta subunit of Mt ATP synthase [detail] 831186
9.3 MGP1 MALE GAMETOPHYTE DEFECTIVE 1 [detail] 816723
9.2 AT2G27730 copper ion binding protein [detail] 817319
8.9 PRXIIF peroxiredoxin IIF [detail] 819778
7.6 QPT quinolinate phoshoribosyltransferase [detail] 814663
5.9 AT2G25570 binding protein [detail] 817096
5.9 AT5G63000 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [detail] 836420
Coexpressed
gene list		 [Coexpressed gene list for MSD1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256439_at
256439_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256439_at
256439_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256439_at
256439_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820263      
Refseq ID (protein) NP_001030670.1 
NP_187703.1 


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