[←][→] ath   At3g10920 Gene
functional annotation
Function   manganese superoxide dismutase 1  
GO BP
GO:0019430 [list] [network] removal of superoxide radicals  (7 genes)  IC  
GO:0010043 [list] [network] response to zinc ion  (46 genes)  IEP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (697 genes)  IMP  
GO CC
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4228 genes)  HDA IDA ISM NAS  
GO MF
GO:0004784 [list] [network] superoxide dismutase activity  (10 genes)  IDA  
GO:0005507 [list] [network] copper ion binding  (132 genes)  HDA  
GO:0046872 [list] [network] metal ion binding  (1000 genes)  IDA  
KEGG ath04146 [list] [network] Peroxisome (88 genes)
Protein NP_001030670.1  NP_187703.1 
BLAST NP_001030670.1  NP_187703.1 
Orthologous [Ortholog page] LOC543249 (tae)  LOC543471 (tae)  LOC4338417 (osa)  LOC7455231 (ppo)  LOC7477763 (ppo)  LOC25489848 (mtr)  LOC100101896 (gma)  LOC100785490 (gma)  LOC101256386 (sly)  MSD1 (bra)  LOC103870420 (bra)  LOC123047259 (tae)  LOC123428270 (hvu) 
Subcellular
localization
wolf
mito 8,  chlo 1  (predict for NP_001030670.1)
mito 7,  chlo 2  (predict for NP_187703.1)
Subcellular
localization
TargetP
mito 7  (predict for NP_001030670.1)
mito 7  (predict for NP_187703.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 6
ath04146 Peroxisome 2
Genes directly connected with MSD1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.7 PRXIIF peroxiredoxin IIF [detail] 819778
9.9 AT5G47570 NADH dehydrogenase ubiquinone 1 beta subcomplex subunit [detail] 834807
9.9 AT2G27730 copper ion binding protein [detail] 817319
7.7 QPT quinolinate phoshoribosyltransferase [detail] 814663
6.5 AT2G25570 binding protein [detail] 817096
6.1 AT5G63000 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [detail] 836420
Coexpressed
gene list		 [Coexpressed gene list for MSD1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256439_at
256439_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256439_at
256439_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256439_at
256439_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820263      
Refseq ID (protein) NP_001030670.1 
NP_187703.1 


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