cis; CCACACA


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CCACACA

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CCACACA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.64At5g20220zinc knuckle (CCHC-type) family protein C2H2
0.61At3g02830zinc finger (CCCH-type) family protein ((ZFN1)) C2H2
0.57At2g21320zinc finger (B-box type) family protein C2C2-CO-like
0.57At3g02380zinc finger protein CONSTANS-LIKE 2 (COL2) ((CO, COL2)) C2C2-CO-like
0.56At4g00050basic helix-loop-helix (bHLH) family protein BHLH
0.54At5g56860zinc finger (GATA type) family protein C2C2-Gata
0.51At5g44190myb family transcription factor (GLK2) ((GLK2, GPRI2)) G2-like
0.50At1g34310transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related ARF
-0.50At1g28050zinc finger (B-box type) family protein C2C2-CO-like
0.49At5g16540zinc finger (CCCH-type) family protein ((ZFN3)) C2H2
0.48At5g62430Dof-type zinc finger domain-containing protein C2C2-Dof
0.48At3g13040myb family transcription factor G2-like
0.48At1g73870zinc finger (B-box type) family protein C2C2-CO-like
0.47At4g14540CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family CCAAT-HAP3
0.47At5g15850zinc finger protein CONSTANS-LIKE 1 (COL1) ((COL1)) C2C2-CO-like

link to other 304 cis elements in ATTED

similar seq.
CCACACA
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TGTGTGG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CCACACA1.000.0753
AGCCACA0.890.0653
ATCCACA0.830.0653
ACCTTAT0.820.0660
AGATAAG0.800.0838
CTTATCT0.790.0821
GATAAGG0.790.0739
TAGCCAC0.770.0759
TATCCAC0.770.0753
ATCTTAT0.770.0723