| functional annotation |
| Function |
dicer-like 1 |
|
| GO BP |
|
GO:0010599 [list] [network] production of lsiRNA involved in RNA interference
|
(3 genes)
|
IMP
|
 |
|
GO:0035279 [list] [network] mRNA cleavage involved in gene silencing by miRNA
|
(6 genes)
|
IMP
|
|
|
GO:0048317 [list] [network] seed morphogenesis
|
(10 genes)
|
IMP
|
|
|
GO:0009616 [list] [network] virus induced gene silencing
|
(12 genes)
|
IMP
|
|
|
GO:0010098 [list] [network] suspensor development
|
(12 genes)
|
IMP
|
|
|
GO:0031053 [list] [network] primary miRNA processing
|
(12 genes)
|
TAS
|
|
|
GO:0010267 [list] [network] production of ta-siRNAs involved in RNA interference
|
(15 genes)
|
IMP
|
|
|
GO:0016075 [list] [network] rRNA catabolic process
|
(17 genes)
|
IEA
|
|
|
GO:2000034 [list] [network] regulation of seed maturation
|
(21 genes)
|
IMP
|
|
|
GO:0009880 [list] [network] embryonic pattern specification
|
(25 genes)
|
IMP
|
|
|
GO:0035196 [list] [network] production of miRNAs involved in gene silencing by miRNA
|
(29 genes)
|
IGI
|
|
|
GO:0000911 [list] [network] cytokinesis by cell plate formation
|
(63 genes)
|
IMP
|
|
|
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem
|
(173 genes)
|
IMP
|
|
|
GO:0031047 [list] [network] gene silencing by RNA
|
(183 genes)
|
IEA
|
|
|
GO:0009908 [list] [network] flower development
|
(447 genes)
|
TAS
|
|
|
GO:0006396 [list] [network] RNA processing
|
(831 genes)
|
IEA
ISS
|
|
|
| GO CC |
|
| GO MF |
|
GO:0004525 [list] [network] ribonuclease III activity
|
(10 genes)
|
IEA
|
|
|
GO:0003725 [list] [network] double-stranded RNA binding
|
(16 genes)
|
IDA
|
|
|
GO:0004386 [list] [network] helicase activity
|
(157 genes)
|
IEA
|
|
|
GO:0003723 [list] [network] RNA binding
|
(1790 genes)
|
IEA
|
|
|
GO:0005524 [list] [network] ATP binding
|
(2003 genes)
|
IEA
|
|
|
GO:0003677 [list] [network] DNA binding
|
(2280 genes)
|
IEA
|
|
|
GO:0046872 [list] [network] metal ion binding
|
(3180 genes)
|
IEA
|
|
|
GO:0005515 [list] [network] protein binding
|
(4605 genes)
|
IPI
|
|
|
| KEGG |
|
|
| Protein |
NP_001184881.1
NP_171612.1
|
| BLAST |
NP_001184881.1
NP_171612.1
|
| Orthologous |
[Ortholog page]
LOC4331440 (osa)
LOC11431448 (mtr)
LOC100264308 (vvi)
LOC100381417 (zma)
LOC100780953 (gma)
LOC100811631 (gma)
DCL1 (sly)
LOC103844613 (bra)
|
Subcellular
localization
wolf |
|
nucl 3,
chlo 3,
cysk_nucl 2,
plas 1,
cyto 1,
mito 1,
vacu 1,
golg_plas 1,
E.R._plas 1
|
(predict for NP_001184881.1)
|
|
nucl 3,
chlo 3,
cysk_nucl 2,
plas 1,
cyto 1,
mito 1,
vacu 1,
golg_plas 1,
E.R._plas 1
|
(predict for NP_171612.1)
|
|
Subcellular
localization
TargetP |
|
other 8
|
(predict for NP_001184881.1)
|
|
other 8
|
(predict for NP_171612.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath03040 |
Spliceosome |
2 |
 |
Genes directly connected with DCL1 on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 7.0 |
AT3G50380 |
vacuolar protein sorting-associated protein, putative (DUF1162) |
[detail] |
824202 |
| 6.8 |
AT1G60200 |
splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein |
[detail] |
842315 |
| 6.6 |
SAC3A |
SAC3/GANP/Nin1/mts3/eIF-3 p25 family |
[detail] |
818519 |
| 5.1 |
AT3G03360 |
F-box/RNI-like superfamily protein |
[detail] |
821272 |
|
Coexpressed
gene list |
[Coexpressed gene list for DCL1]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
261584_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
261584_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
261584_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT1G01040 Gene
