[←][→] ath   At1g02340 Gene
functional annotation
Function   basic helix-loop-helix (bHLH) DNA-binding superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009585 [list] [network] red, far-red light phototransduction  (20 genes)  TAS  
GO:0009785 [list] [network] blue light signaling pathway  (24 genes)  TAS  
GO:0010218 [list] [network] response to far red light  (48 genes)  IDA  
GO:0009738 [list] [network] abscisic acid-activated signaling pathway  (159 genes)  IMP  
GO:0009642 [list] [network] response to light intensity  (373 genes)  IEP  
GO:0007165 [list] [network] signal transduction  (2054 genes)  TAS  
GO CC
GO:0005829 [list] [network] cytosol  (2559 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM TAS  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (62 genes)  IMP  
GO:0046983 [list] [network] protein dimerization activity  (421 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (708 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001323315.1  NP_563650.1 
BLAST NP_001323315.1  NP_563650.1 
Orthologous [Ortholog page] LOC103843761 (bra) 
Subcellular
localization
wolf
nucl 9  (predict for NP_001323315.1)
nucl 10  (predict for NP_563650.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001323315.1)
other 7  (predict for NP_563650.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00380 Tryptophan metabolism 2
ath04075 Plant hormone signal transduction 2
Genes directly connected with HFR1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
6.5 HB-2 homeobox protein 2 [detail] 827384
5.8 AT3G16800 Protein phosphatase 2C family protein [detail] 820933
5.7 OBP4 OBF binding protein 4 [detail] 836206
5.4 AT1G02350 protoporphyrinogen oxidase-like protein [detail] 839490
5.3 FLP1 flowering-promoting factor-like protein [detail] 28720195
4.7 PIL1 phytochrome interacting factor 3-like 1 [detail] 819311
Coexpressed
gene list		 [Coexpressed gene list for HFR1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259417_at
259417_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259417_at
259417_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259417_at
259417_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839300      
Refseq ID (protein) NP_001323315.1 
NP_563650.1 


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