[][] ath   AT1G02840 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (30 genes)  IBA  
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (38 genes)  IBA  
GO CC
GO:0035061 [list] [network] interchromatin granule  (2 genes)  IDA  
GO:0016607 [list] [network] nuclear speck  (86 genes)  IBA IDA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISS  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001318908.1  NP_001321307.1  NP_001321308.1  NP_850933.1  NP_850934.1 
BLAST NP_001318908.1  NP_001321307.1  NP_001321308.1  NP_850933.1  NP_850934.1 
Orthologous [Ortholog page] SR34b (ath)SR30 (ath)LOC4332806 (osa)LOC4338552 (osa)LOC7462688 (ppo)LOC7481727 (ppo)LOC11410860 (mtr)LOC11412312 (mtr)LOC11424462 (mtr)LOC11430016 (mtr)LOC100217203 (zma)LOC100249315 (vvi)LOC100255499 (vvi)LOC100284054 (zma)LOC100285019 (zma)LOC100789847 (gma)LOC100794282 (gma)LOC101247256 (sly)LOC101257012 (sly)LOC103836748 (bra)LOC103868210 (bra)LOC103871643 (bra)
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_001318908.1)
nucl 6,  cyto 4  (predict for NP_001321307.1)
nucl 6,  cyto 4  (predict for NP_001321308.1)
nucl 7,  cyto 1,  mito 1,  plas 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_850933.1)
nucl 6,  cyto 2,  mito 1,  plas 1,  mito_plas 1  (predict for NP_850934.1)
Subcellular
localization
TargetP
other 7,  mito 5  (predict for NP_001318908.1)
other 7,  mito 5  (predict for NP_001321307.1)
other 7,  mito 5  (predict for NP_001321308.1)
other 7,  mito 5  (predict for NP_850933.1)
other 7,  mito 5  (predict for NP_850934.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 11
ath03013 RNA transport 2
Genes directly connected with SR34 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
8.5 RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 [detail] 818311
8.5 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor [detail] 829822
7.9 U1-70K U1 small nuclear ribonucleoprotein-70K [detail] 824230
7.7 ARP4 actin-related protein 4 [detail] 838425
7.0 AT2G23070 Protein kinase superfamily protein [detail] 816837
6.2 AT1G19880 Regulator of chromosome condensation (RCC1) family protein [detail] 838576
Coexpressed
gene list
[Coexpressed gene list for SR34]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262110_at
262110_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262110_at
262110_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
262110_at
262110_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 839262    
Refseq ID (protein) NP_001318908.1 
NP_001321307.1 
NP_001321308.1 
NP_850933.1 
NP_850934.1 


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