[←][→] ath   At1g02840 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0035061 [list] [network] interchromatin granule  (2 genes)  IDA  
GO:0016607 [list] [network] nuclear speck  (50 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISS  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1535 genes)  HDA IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001318908.1  NP_001321307.1  NP_001321308.1  NP_850933.1  NP_850934.1 
BLAST NP_001318908.1  NP_001321307.1  NP_001321308.1  NP_850933.1  NP_850934.1 
Orthologous [Ortholog page] LOC780660 (tae)  LOC780668 (tae)  SR34b (ath)  SR30 (ath)  LOC4332806 (osa)  LOC4338552 (osa)  LOC7481727 (ppo)  LOC11412312 (mtr)  LOC11424462 (mtr)  LOC11430016 (mtr)  LOC18096446 (ppo)  LOC18098659 (ppo)  LOC100789847 (gma)  LOC100794282 (gma)  LOC100796900 (gma)  LOC101257012 (sly)  LOC103836748 (bra)  LOC103868210 (bra)  LOC103871643 (bra)  LOC112323219 (ppo)  LOC123051591 (tae)  LOC123053202 (tae)  LOC123061814 (tae)  LOC123070505 (tae)  LOC123078916 (tae)  LOC123097510 (tae)  LOC123424755 (hvu)  LOC123444166 (hvu)  LOC123448632 (hvu) 
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_001318908.1)
nucl 6,  cyto 4  (predict for NP_001321307.1)
nucl 6,  cyto 4  (predict for NP_001321308.1)
nucl 7,  cyto 1,  mito 1,  plas 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_850933.1)
nucl 6,  cyto 2,  mito 1,  plas 1,  mito_plas 1  (predict for NP_850934.1)
Subcellular
localization
TargetP
other 7,  mito 5  (predict for NP_001318908.1)
other 7,  mito 5  (predict for NP_001321307.1)
other 7,  mito 5  (predict for NP_001321308.1)
other 7,  mito 5  (predict for NP_850933.1)
other 7,  mito 5  (predict for NP_850934.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 14
Genes directly connected with SR34 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.6 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor [detail] 829822
8.9 RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 [detail] 818311
8.7 RSZ21 RS-containing zinc finger protein 21 [detail] 838997
8.4 RS31 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 825359
6.9 AT4G35785 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 829732
6.1 HDA15 histone deacetylase 15 [detail] 821382
6.0 AT1G19880 Regulator of chromosome condensation (RCC1) family protein [detail] 838576
Coexpressed
gene list		 [Coexpressed gene list for SR34]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262110_at
262110_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262110_at
262110_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262110_at
262110_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839262      
Refseq ID (protein) NP_001318908.1 
NP_001321307.1 
NP_001321308.1 
NP_850933.1 
NP_850934.1 


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