[←][→] ath   AT1G03360 Gene
functional annotation
Function   ribosomal RNA processing 4  
GO BP
GO:0071049 [list] [network] nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription  (2 genes)  IBA  
GO:0071034 [list] [network] CUT catabolic process  (3 genes)  IBA  
GO:0071038 [list] [network] nuclear polyadenylation-dependent tRNA catabolic process  (7 genes)  IBA  
GO:0071051 [list] [network] polyadenylation-dependent snoRNA 3'-end processing  (7 genes)  IBA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (8 genes)  IBA  
GO:0060149 [list] [network] negative regulation of posttranscriptional gene silencing  (8 genes)  IMP  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (9 genes)  IBA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (10 genes)  IBA  
GO:0034427 [list] [network] nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'  (12 genes)  IBA  
GO:0043928 [list] [network] exonucleolytic catabolism of deadenylated mRNA  (16 genes)  IBA  
GO:0000460 [list] [network] maturation of 5.8S rRNA  (18 genes)  IMP  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (12 genes)  IBA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (13 genes)  IBA  
GO:0000178 [list] [network] exosome (RNase complex)  (17 genes)  IBA  
GO:0005654 [list] [network] nucleoplasm  (444 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_171835.1 
BLAST NP_171835.1 
Orthologous [Ortholog page] LOC4336421 (osa)  LOC7462802 (ppo)  LOC11418314 (mtr)  LOC100216860 (zma)  LOC100244305 (vvi)  LOC100776358 (gma)  LOC101267058 (sly)  LOC103844513 (bra) 
Subcellular
localization
wolf
chlo 5,  nucl 2,  mito 2  (predict for NP_171835.1)
Subcellular
localization
TargetP
mito 8  (predict for NP_171835.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 2
ath03008 Ribosome biogenesis in eukaryotes 2
Genes directly connected with RRP4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.2 PRMT3 protein arginine methyltransferase 3 [detail] 820407
10.2 RID2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 835833
10.1 AT2G19385 zinc ion binding protein [detail] 816457
8.6 AT-IE histidine biosynthesis bifunctional protein (HISIE) [detail] 840076
7.4 AT5G05990 Mitochondrial glycoprotein family protein [detail] 830486
7.0 AT4G30840 Transducin/WD40 repeat-like superfamily protein [detail] 829208
6.5 AT3G56120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 824778
6.4 AT1G62150 Mitochondrial transcription termination factor family protein [detail] 842511
5.7 DHDPS1 dihydrodipicolinate synthase 1 [detail] 825259
Coexpressed
gene list		 [Coexpressed gene list for RRP4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264357_at
264357_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264357_at
264357_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264357_at
264357_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839521      
Refseq ID (protein) NP_171835.1 


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