[←][→] ath   At1g04300 Gene
functional annotation
Function   TRAF-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:1905037 [list] [network] autophagosome organization  (7 genes)  IMP  
GO:0045087 [list] [network] innate immune response  (161 genes)  IGI  
GO CC
GO:0005776 [list] [network] autophagosome  (22 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (2529 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  IDA  
GO:0005576 [list] [network] extracellular region  (3154 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IDA  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001077454.1  NP_001077455.1  NP_001184907.1  NP_001321565.1  NP_001321566.1  NP_171926.3 
BLAST NP_001077454.1  NP_001077455.1  NP_001184907.1  NP_001321565.1  NP_001321566.1  NP_171926.3 
Orthologous [Ortholog page] AT5G43560 (ath)  AT5G52330 (ath)  LOC7473456 (ppo)  LOC7474198 (ppo)  LOC9269535 (osa)  LOC11434467 (mtr)  LOC25484396 (mtr)  LOC25484397 (mtr)  LOC100784393 (gma)  LOC100799509 (gma)  LOC100818052 (gma)  LOC100820160 (gma)  LOC101251685 (sly)  LOC101260404 (sly)  LOC101267449 (sly)  LOC103836582 (bra)  LOC103840147 (bra)  LOC103843660 (bra)  LOC103844271 (bra)  LOC113002616 (sly)  LOC123102329 (tae)  LOC123110538 (tae)  LOC123119517 (tae)  LOC123397892 (hvu) 
Subcellular
localization
wolf
nucl 4,  vacu 4,  golg 1,  plas 1,  extr 1  (predict for NP_001077454.1)
nucl 10  (predict for NP_001077455.1)
nucl 10  (predict for NP_001184907.1)
nucl 10  (predict for NP_001321565.1)
nucl 5,  vacu 2,  chlo 1,  cyto 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1,  cyto_plas 1  (predict for NP_001321566.1)
nucl 10  (predict for NP_171926.3)
Subcellular
localization
TargetP
scret 9  (predict for NP_001077454.1)
other 8  (predict for NP_001077455.1)
other 8  (predict for NP_001184907.1)
other 7  (predict for NP_001321565.1)
mito 6,  other 4  (predict for NP_001321566.1)
other 8  (predict for NP_171926.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
Genes directly connected with AT1G04300 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.9 EMB3011 RNA helicase family protein [detail] 831141
10.8 AT4G02480 AAA-type ATPase family protein [detail] 827979
10.7 FIP1[V] FIP1[V]-like protein [detail] 835916
9.5 AT5G43560 TRAF-like superfamily protein [detail] 834376
8.5 GTE8 global transcription factor group E8 [detail] 822345
7.9 CID4 CTC-interacting domain 4 [detail] 820615
7.1 AT5G55100 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [detail] 835601
6.7 AT1G21610 wound-responsive family protein [detail] 838762
6.3 AT1G20670 DNA-binding bromodomain-containing protein [detail] 838655
Coexpressed
gene list		 [Coexpressed gene list for AT1G04300]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
263654_at
263654_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
263654_at
263654_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
263654_at
263654_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839551      
Refseq ID (protein) NP_001077454.1 
NP_001077455.1 
NP_001184907.1 
NP_001321565.1 
NP_001321566.1 
NP_171926.3 


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