[←][→] ath   AT1G04620 Gene
functional annotation
Function   coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family  
GO BP
GO:0033354 [list] [network] chlorophyll cycle  (1 genes)  IBA IDA  
GO:0015994 [list] [network] chlorophyll metabolic process  (61 genes)  IDA  
GO:0055114 [list] [network] oxidation-reduction process  (1468 genes)  IDA IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3363 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IBA IDA ISM  
GO MF
GO:0090415 [list] [network] 7-hydroxymethyl chlorophyll a reductase activity  (1 genes)  IBA IDA  
GO:0051536 [list] [network] iron-sulfur cluster binding  (145 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG ath00860 [list] [network] Porphyrin and chlorophyll metabolism (53 genes)
Protein NP_171956.2 
BLAST NP_171956.2 
Orthologous [Ortholog page] LOC4335472 (osa)  LOC7477016 (ppo)  LOC25483044 (mtr)  LOC100192754 (zma)  LOC100254621 (vvi)  LOC100791244 (gma)  LOC100812203 (gma)  LOC101248918 (sly)  LOC103844235 (bra) 
Subcellular
localization
wolf
chlo 3,  vacu 2,  chlo_mito 2,  nucl 1,  mito 1,  E.R._vacu 1  (predict for NP_171956.2)
Subcellular
localization
TargetP
chlo 7  (predict for NP_171956.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00730 Thiamine metabolism 2
Genes directly connected with HCAR on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.9 THIC thiaminC [detail] 817513
8.3 JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [detail] 821629
8.0 COR27 cold regulated protein 27 [detail] 834301
Coexpressed
gene list		 [Coexpressed gene list for HCAR]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264597_at
264597_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264597_at
264597_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264597_at
264597_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839472      
Refseq ID (protein) NP_171956.2 


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