ATTED-II : GeneID search result

[←][→] ath AT1G04820 Gene

functional annotation

Function

tubulin alpha-4 chain

GO BP

GO:0071258 [list] [network] cellular response to gravity	(3 genes)	IMP
GO:0000226 [list] [network] microtubule cytoskeleton organization	(134 genes)	IBA
GO:0007017 [list] [network] microtubule-based process	(183 genes)	IBA TAS
GO:0000278 [list] [network] mitotic cell cycle	(198 genes)	IBA
GO:0046686 [list] [network] response to cadmium ion	(346 genes)	IEP

GO CC

GO:0045298 [list] [network] tubulin complex	(13 genes)	ISS
GO:0005874 [list] [network] microtubule	(186 genes)	IBA
GO:0005774 [list] [network] vacuolar membrane	(624 genes)	IDA
GO:0005618 [list] [network] cell wall	(685 genes)	IDA
GO:0009570 [list] [network] chloroplast stroma	(750 genes)	IDA
GO:0005576 [list] [network] extracellular region	(3363 genes)	HDA
GO:0005829 [list] [network] cytosol	(3506 genes)	HDA IDA
GO:0005886 [list] [network] plasma membrane	(3771 genes)	IDA
GO:0005634 [list] [network] nucleus	(10793 genes)	ISM
GO:0005737 [list] [network] cytoplasm	(14855 genes)	IBA

GO MF

GO:0005200 [list] [network] structural constituent of cytoskeleton	(30 genes)	IBA ISS
GO:0005525 [list] [network] GTP binding	(248 genes)	IBA
GO:0003729 [list] [network] mRNA binding	(1026 genes)	IDA

KEGG

ath04145 [list] [network] Phagosome (82 genes)

Protein

NP_171974.1

BLAST

NP_171974.1

Orthologous

[Ortholog page] LOC542248 (zma) LOC542395 (zma) LOC542582 (zma) LOC732582 (gma) TUA6 (ath) TUA3 (ath) TUA5 (ath) TUA2 (ath) TUA1 (ath) LOC4332083 (osa) LOC4333966 (osa) LOC4343694 (osa) LOC4350197 (osa) LOC7457696 (ppo) LOC7463572 (ppo) LOC7467233 (ppo) LOC7478676 (ppo) LOC7478755 (ppo) LOC7482463 (ppo) LOC7489664 (ppo) LOC7491044 (ppo) LOC11408319 (mtr) LOC11415454 (mtr) LOC11416880 (mtr) LOC11432745 (mtr) LOC11441048 (mtr) LOC25485311 (mtr) LOC100037751 (zma) LOC100247081 (vvi) LOC100247366 (vvi) LOC100255913 (vvi) LOC100256600 (vvi) LOC100258974 (vvi) LOC100260286 (vvi) LOC100381303 (zma) LOC100383374 (zma) LOC100779027 (gma) LOC100780531 (gma) LOC100781185 (gma) LOC100784487 (gma) LOC100785622 (gma) LOC100786598 (gma) LOC100787058 (gma) LOC100789289 (gma) LOC100796371 (gma) LOC100799688 (gma) LOC100806907 (gma) LOC100807401 (gma) LOC100854977 (vvi) LOC101244864 (sly) LOC101248155 (sly) LOC101254013 (sly) LOC101255154 (sly) LOC103643947 (zma) LOC103832901 (bra) LOC103845722 (bra) LOC103849546 (bra) LOC103851297 (bra) LOC103851298 (bra) LOC103851300 (bra) LOC103856395 (bra) LOC103871371 (bra)

Subcellular
localization
wolf

cyto 6, nucl 2, cysk 2, cysk_nucl 2

(predict for NP_171974.1)

Subcellular
localization
TargetP

other 6, scret 4

(predict for NP_171974.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04145	Phagosome	11

Genes directly connected with TUA4 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
22.1	TUA2	tubulin alpha-2 chain	[detail]	841425
16.5	TUA6	Tubulin/FtsZ family protein	[detail]	827154
10.2	TUB3	tubulin beta chain 3	[detail]	836391
7.6	TUB7	tubulin beta-7 chain	[detail]	817504
7.6	AGP9	arabinogalactan protein 9	[detail]	815978
7.2	TUB6	beta-6 tubulin	[detail]	831100
7.0	TUB8	tubulin beta 8	[detail]	832451
6.2	ACT3	actin 3	[detail]	824542
6.0	TUB2	tubulin beta chain 2	[detail]	836390

Coexpressed
gene list

[Coexpressed gene list for TUA4]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

261129_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

261129_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

261129_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	839405
Refseq ID (protein)	NP_171974.1

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