ATTED-II : GeneID search result

[←][→] ath At1g05230 Gene

functional annotation

Function

homeodomain GLABROUS 2

GO BP

GO:2000144 [list] [network] positive regulation of DNA-templated transcription initiation	(4 genes)	IDA
GO:0048497 [list] [network] maintenance of floral organ identity	(8 genes)	IGI IMP
GO:0052541 [list] [network] plant-type cell wall cellulose metabolic process	(14 genes)	IDA
GO:0048354 [list] [network] mucilage biosynthetic process involved in seed coat development	(16 genes)	IGI
GO:0010214 [list] [network] seed coat development	(54 genes)	IMP
GO:0010090 [list] [network] trichome morphogenesis	(66 genes)	IMP

GO CC

GO:0005634 [list] [network] nucleus

(10305 genes)

ISM

GO MF

GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(38 genes)	IEA
GO:0008289 [list] [network] lipid binding	(240 genes)	IEA
GO:0000976 [list] [network] transcription cis-regulatory region binding	(708 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1576 genes)	ISS
GO:0005515 [list] [network] protein binding	(5066 genes)	IPI

KEGG

Protein

NP_001117231.1 NP_001184911.1 NP_001322673.1 NP_001322674.1 NP_001322675.1 NP_001322676.1 NP_001322677.1 NP_001322678.1 NP_001322679.1 NP_001322680.1 NP_172015.1 NP_849596.1

BLAST

NP_001117231.1 NP_001184911.1 NP_001322673.1 NP_001322674.1 NP_001322675.1 NP_001322676.1 NP_001322677.1 NP_001322678.1 NP_001322679.1 NP_001322680.1 NP_172015.1 NP_849596.1

Orthologous

[Ortholog page] PDF2 (ath) ATML1 (ath) LOC4337074 (osa) LOC4344614 (osa) LOC4344832 (osa) LOC7458546 (ppo) LOC7462050 (ppo) LOC7485428 (ppo) LOC7489907 (ppo) LOC11417538 (mtr) LOC11441377 (mtr) LOC100782240 (gma) LOC100782260 (gma) LOC100790101 (gma) LOC100797992 (gma) LOC100809556 (gma) LOC100815499 (gma) LOC101256132 (sly) LOC101259395 (sly) LOC101265620 (sly) LOC103834218 (bra) LOC103839805 (bra) LOC103843620 (bra) LOC103844157 (bra) LOC103859403 (bra) LOC103861249 (bra) LOC123046820 (tae) LOC123054665 (tae) LOC123147440 (tae) LOC123161615 (tae) LOC123164353 (tae) LOC123190512 (tae) LOC123407806 (hvu) LOC123427922 (hvu)

Subcellular
localization
wolf

nucl 6, plas 1, E.R. 1, E.R._plas 1	(predict for NP_001117231.1)
nucl 6, plas 1, E.R. 1, E.R._plas 1	(predict for NP_001184911.1)
nucl 6, plas 1, E.R. 1, E.R._plas 1	(predict for NP_001322673.1)
nucl 6, plas 1, E.R. 1, E.R._plas 1	(predict for NP_001322674.1)
nucl 6, plas 1, E.R. 1, E.R._plas 1	(predict for NP_001322675.1)
nucl 6, plas 1, E.R. 1, E.R._plas 1	(predict for NP_001322676.1)
nucl 6, plas 1, E.R. 1, E.R._plas 1	(predict for NP_001322677.1)
nucl 6, plas 1, E.R. 1, E.R._plas 1	(predict for NP_001322678.1)
nucl 9, cyto 1, plas 1, cyto_plas 1	(predict for NP_001322679.1)
nucl 6, plas 1, E.R. 1, E.R._plas 1	(predict for NP_001322680.1)
nucl 6, plas 1, E.R. 1, E.R._plas 1	(predict for NP_172015.1)
nucl 6, plas 1, E.R. 1, E.R._plas 1	(predict for NP_849596.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001117231.1)
other 7	(predict for NP_001184911.1)
other 7	(predict for NP_001322673.1)
other 7	(predict for NP_001322674.1)
other 7	(predict for NP_001322675.1)
other 7	(predict for NP_001322676.1)
other 7	(predict for NP_001322677.1)
other 7	(predict for NP_001322678.1)
other 7	(predict for NP_001322679.1)
other 7	(predict for NP_001322680.1)
other 7	(predict for NP_172015.1)
other 7	(predict for NP_849596.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath02010	ABC transporters	3

Genes directly connected with HDG2 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
7.6	ATML1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein	[detail]	828263
6.5	HB-7	homeobox-7	[detail]	834733
6.4	PDF2	protodermal factor 2	[detail]	825828

Coexpressed
gene list

[Coexpressed gene list for HDG2]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

264582_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

264582_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

264582_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	839256
Refseq ID (protein)	NP_001117231.1
	NP_001184911.1
	NP_001322673.1
	NP_001322674.1
	NP_001322675.1
	NP_001322676.1
	NP_001322677.1
	NP_001322678.1
	NP_001322679.1
	NP_001322680.1
	NP_172015.1
	NP_849596.1

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