[←][→] ath   AT1G05460 Gene
functional annotation
Function   P-loop containing nucleoside triphosphate hydrolases superfamily protein  
GO BP
GO:0009616 [list] [network] virus induced gene silencing  (12 genes)  IMP  
GO:0035194 [list] [network] posttranscriptional gene silencing by RNA  (130 genes)  IBA IMP  
GO CC
GO:0043186 [list] [network] P granule  (5 genes)  IBA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IBA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (75 genes)  ISS  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001320371.1  NP_172037.1 
BLAST NP_001320371.1  NP_172037.1 
Orthologous [Ortholog page] LOC4331698 (osa)  LOC11416205 (mtr)  LOC11441457 (mtr)  LOC100247679 (vvi)  LOC100382450 (zma)  LOC100801796 (gma)  LOC101251686 (sly)  LOC101258662 (sly)  LOC103631746 (zma)  LOC103844125 (bra) 
Subcellular
localization
wolf
chlo 3,  plas 2,  nucl 1,  cyto_plas 1,  cyto 1,  chlo_mito 1,  cysk_nucl 1,  E.R._plas 1  (predict for NP_001320371.1)
chlo 3,  plas 2,  nucl 1,  cyto_plas 1,  cyto 1,  vacu 1,  chlo_mito 1,  cysk_nucl 1  (predict for NP_172037.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001320371.1)
other 8  (predict for NP_172037.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with SDE3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.5 NRPD2A nuclear RNA polymerase D2A [detail] 821960
7.7 AT2G13690 PRLI-interacting factor [detail] 815853
7.5 KTF1 kow domain-containing transcription factor 1 [detail] 830308
5.9 SGS3 XS domain-containing protein / XS zinc finger domain-containing protein-like protein [detail] 832422
5.2 AT5G19670 Exostosin family protein [detail] 832087
4.9 AT5G06670 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 830555
4.8 RBL Transducin/WD40 repeat-like superfamily protein [detail] 821658
Coexpressed
gene list		 [Coexpressed gene list for SDE3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261381_at
261381_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261381_at
261381_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261381_at
261381_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837047      
Refseq ID (protein) NP_001320371.1 
NP_172037.1 


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