[←][→] ath   At1g06040 Gene
functional annotation
Function   B-box zinc finger family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:1902448 [list] [network] positive regulation of shade avoidance  (4 genes)  IEP IGI IPI  
GO:0009640 [list] [network] photomorphogenesis  (80 genes)  IGI  
GO:0048573 [list] [network] photoperiodism, flowering  (94 genes)  IMP  
GO:0090351 [list] [network] seedling development  (123 genes)  IGI  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (287 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (607 genes)  IGI  
GO:0009416 [list] [network] response to light stimulus  (1981 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (62 genes)  IDA  
GO:0008270 [list] [network] zinc ion binding  (429 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1277 genes)  ISS  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_172094.1  NP_849598.1 
BLAST NP_172094.1  NP_849598.1 
Orthologous [Ortholog page] LOC732574 (gma)  CIP1 (sly)  STH (ath)  LOC4329923 (osa)  LOC4336260 (osa)  LOC11431876 (mtr)  LOC18106901 (ppo)  LOC25492672 (mtr)  LOC100682429 (tae)  LOC100779183 (gma)  LOC100797515 (gma)  LOC100814727 (gma)  LOC103836497 (bra)  LOC103843573 (bra)  LOC103844078 (bra)  LOC103865141 (bra)  LOC103867878 (bra)  LOC112328214 (ppo)  LOC123045867 (tae)  LOC123053742 (tae)  LOC123127650 (tae)  LOC123137411 (tae)  LOC123144758 (tae)  LOC123189759 (tae)  LOC123403653 (hvu)  LOC123427095 (hvu) 
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for NP_172094.1)
cyto 4,  chlo 3,  cyto_nucl 3  (predict for NP_849598.1)
Subcellular
localization
TargetP
other 6,  scret 4  (predict for NP_172094.1)
other 6,  scret 4  (predict for NP_849598.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
Genes directly connected with STO on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
13.2 CDF3 cycling DOF factor 3 [detail] 823904
12.9 AT5G64170 dentin sialophosphoprotein-like protein [detail] 836538
12.3 AT5G06980 uncharacterized protein [detail] 830589
8.7 EPR1 Homeodomain-like superfamily protein [detail] 838413
7.4 AT4G13010 Oxidoreductase, zinc-binding dehydrogenase family protein [detail] 826914
6.7 AT5G63380 AMP-dependent synthetase and ligase family protein [detail] 836457
6.5 BBX30 B-box type zinc finger family protein [detail] 3769879
Coexpressed
gene list		 [Coexpressed gene list for STO]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
260956_at
260956_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
260956_at
260956_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
260956_at
260956_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837113      
Refseq ID (protein) NP_172094.1 
NP_849598.1 


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