[←][→] ath   At1g07090 Gene
functional annotation
Function   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009299 [list] [network] mRNA transcription  (13 genes)  ISS  
GO:0019827 [list] [network] stem cell population maintenance  (95 genes)  IEA  
GO:0090698 [list] [network] post-embryonic plant morphogenesis  (221 genes)  ISS  
GO:0010073 [list] [network] meristem maintenance  (230 genes)  IEA  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (697 genes)  IEA  
GO:0048316 [list] [network] seed development  (1294 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM ISS  
GO MF
KEGG
Protein NP_563780.1 
BLAST NP_563780.1 
Orthologous [Ortholog page] LSH3 (ath)  LSH10 (ath)  LSH2 (ath)  LSH4 (ath)  LSH1 (ath)  LSH8 (ath)  LSH7 (ath)  LOC4328416 (osa)  LOC4330024 (osa)  LOC4331099 (osa)  LOC4336401 (osa)  LOC4338491 (osa)  LOC4341811 (osa)  LOC7454352 (ppo)  LOC7455905 (ppo)  LOC7455945 (ppo)  LOC7458006 (ppo)  LOC7458242 (ppo)  LOC7460096 (ppo)  LOC7467540 (ppo)  LOC7470206 (ppo)  LOC7471962 (ppo)  LOC7474992 (ppo)  LOC7480386 (ppo)  LOC7487181 (ppo)  LOC7487704 (ppo)  LOC7489106 (ppo)  LOC7496798 (ppo)  LOC9266624 (osa)  LOC11407427 (mtr)  LOC11408401 (mtr)  LOC11408456 (mtr)  LOC11409774 (mtr)  LOC11410018 (mtr)  LOC11410358 (mtr)  LOC11419093 (mtr)  LOC11434608 (mtr)  LOC18095487 (ppo)  LOC18102467 (ppo)  LOC25484251 (mtr)  LOC25485780 (mtr)  LOC25485963 (mtr)  LOC25493337 (mtr)  LOC25499270 (mtr)  LOC25499718 (mtr)  LSH9 (ath)  LSH5 (ath)  LOC100306082 (gma)  LOC100306225 (gma)  LOC100527164 (gma)  LOC100527409 (gma)  LOC100527554 (gma)  LOC100775798 (gma)  LOC100775838 (gma)  LOC100778283 (gma)  LOC100778886 (gma)  LOC100780494 (gma)  LOC100786135 (gma)  LOC100789834 (gma)  LOC100791424 (gma)  LOC100802715 (gma)  LOC100802937 (gma)  LOC100803605 (gma)  LOC100803965 (gma)  LOC100806134 (gma)  LOC100806493 (gma)  LOC100806497 (gma)  LOC100810350 (gma)  LOC100810655 (gma)  LOC100815968 (gma)  TFAM1 (sly)  LOC101244207 (sly)  LOC101246185 (sly)  LOC101247206 (sly)  TFAM2 (sly)  LOC101252299 (sly)  LOC101253723 (sly)  LOC101256738 (sly)  LOC101260873 (sly)  LOC101261831 (sly)  LOC101262247 (sly)  LOC101263979 (sly)  LOC102663941 (gma)  LOC103828755 (bra)  LOC103832357 (bra)  LOC103837296 (bra)  LOC103843480 (bra)  LOC103843985 (bra)  LOC103845278 (bra)  LOC103845279 (bra)  LOC103848911 (bra)  LOC103850046 (bra)  LOC103851635 (bra)  LOC103853147 (bra)  LOC103853659 (bra)  LOC103854635 (bra)  LOC103858024 (bra)  LOC103859037 (bra)  LOC103861005 (bra)  LOC103865110 (bra)  LOC103865960 (bra)  LOC103866652 (bra)  LOC103867894 (bra)  LOC103867981 (bra)  LOC103874577 (bra)  LOC107276238 (osa)  LOC107278201 (osa)  LOC107278610 (osa)  LOC117125638 (bra)  LOC123041251 (tae)  LOC123045668 (tae)  LOC123046119 (tae)  LOC123049257 (tae)  LOC123052627 (tae)  LOC123053999 (tae)  LOC123058740 (tae)  LOC123074939 (tae)  LOC123127737 (tae)  LOC123128934 (tae)  LOC123136756 (tae)  LOC123137510 (tae)  LOC123144860 (tae)  LOC123146052 (tae)  LOC123149104 (tae)  LOC123159994 (tae)  LOC123166451 (tae)  LOC123181080 (tae)  LOC123181711 (tae)  LOC123185303 (tae)  LOC123189888 (tae)  LOC123402509 (hvu)  LOC123403258 (hvu)  LOC123409615 (hvu)  LOC123411667 (hvu)  LOC123412451 (hvu)  LOC123427243 (hvu)  LOC123430078 (hvu)  LOC123440575 (hvu)  LOC123444893 (hvu) 
Subcellular
localization
wolf
nucl 6,  chlo 3  (predict for NP_563780.1)
Subcellular
localization
TargetP
other 8,  chlo 4  (predict for NP_563780.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
Genes directly connected with LSH6 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
5.1 IBH1 ILI1 binding bHLH 1 [detail] 818908
5.0 AT1G21050 MIZU-KUSSEI-like protein (Protein of unknown function, DUF617) [detail] 838699
4.9 UGT72E1 UDP-glucosyl transferase 72E1 [detail] 824238
4.7 AP2 Integrase-type DNA-binding superfamily protein [detail] 829845
Coexpressed
gene list		 [Coexpressed gene list for LSH6]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256062_at
256062_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256062_at
256062_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256062_at
256062_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837220      
Refseq ID (protein) NP_563780.1 


The preparation time of this page was 0.1 [sec].