[←][→] ath   At1g07170 Gene
functional annotation
Function   PHF5-like protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (105 genes)  IEA ISS  
GO:0009790 [list] [network] embryo development  (780 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (1981 genes)  IEA  
GO CC
GO:0005689 [list] [network] U12-type spliceosomal complex  (7 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001077473.1  NP_001184928.1  NP_001318938.1  NP_001321285.1  NP_001321286.1  NP_563782.1 
BLAST NP_001077473.1  NP_001184928.1  NP_001318938.1  NP_001321285.1  NP_001321286.1  NP_563782.1 
Orthologous [Ortholog page] AT2G30000 (ath)  LOC4337303 (osa)  LOC4338563 (osa)  LOC7463896 (ppo)  LOC7475011 (ppo)  LOC7475012 (ppo)  LOC7496780 (ppo)  LOC11414620 (mtr)  LOC25490917 (mtr)  LOC100305969 (gma)  LOC100777021 (gma)  LOC101247104 (sly)  LOC103843972 (bra)  LOC103857282 (bra)  LOC103865000 (bra)  LOC123046962 (tae)  LOC123054792 (tae)  LOC123148232 (tae)  LOC123160901 (tae)  LOC123168453 (tae)  LOC123190633 (tae)  LOC123411959 (hvu)  LOC123428818 (hvu) 
Subcellular
localization
wolf
cyto 4,  nucl 3,  chlo 1,  cysk_nucl 1  (predict for NP_001077473.1)
cyto 4,  nucl 3,  chlo 1,  cysk_nucl 1  (predict for NP_001184928.1)
cyto 4,  nucl 3,  chlo 1,  cysk_nucl 1  (predict for NP_001318938.1)
cyto 4,  nucl 3,  chlo 1,  cysk_nucl 1  (predict for NP_001321285.1)
cyto 4,  nucl 3,  chlo 1,  cysk_nucl 1  (predict for NP_001321286.1)
cyto 4,  nucl 3,  chlo 1,  cysk_nucl 1  (predict for NP_563782.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001077473.1)
other 8  (predict for NP_001184928.1)
other 8  (predict for NP_001318938.1)
other 8  (predict for NP_001321285.1)
other 8  (predict for NP_001321286.1)
other 8  (predict for NP_563782.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath04130 SNARE interactions in vesicular transport 2
Genes directly connected with AT1G07170 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.7 MEMB11 membrin 11 [detail] 818264
7.4 HTA9 histone H2A protein 9 [detail] 841707
7.3 AT2G29020 Rab5-interacting family protein [detail] 817451
6.8 SEF HIT-type Zinc finger family protein [detail] 833676
6.3 AT5G65575 [detail] 5008333
Coexpressed
gene list		 [Coexpressed gene list for AT1G07170]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256067_at
256067_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256067_at
256067_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256067_at
256067_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837228      
Refseq ID (protein) NP_001077473.1 
NP_001184928.1 
NP_001318938.1 
NP_001321285.1 
NP_001321286.1 
NP_563782.1 


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