ATTED-II : GeneID search result

[←][→] ath AT1G07350 Gene

functional annotation

Function

RNA-binding (RRM/RBD/RNP motifs) family protein

GO BP

GO:0048026 [list] [network] positive regulation of mRNA splicing, via spliceosome	(4 genes)	IBA
GO:0043484 [list] [network] regulation of RNA splicing	(40 genes)	IMP
GO:0009644 [list] [network] response to high light intensity	(65 genes)	IMP
GO:0008380 [list] [network] RNA splicing	(272 genes)	NAS
GO:0006397 [list] [network] mRNA processing	(376 genes)	IEA

GO CC

GO:0016607 [list] [network] nuclear speck	(86 genes)	IEA
GO:0005681 [list] [network] spliceosomal complex	(142 genes)	IBA
GO:1990904 [list] [network] ribonucleoprotein complex	(690 genes)	IBA
GO:0009507 [list] [network] chloroplast	(5095 genes)	ISM
GO:0005634 [list] [network] nucleus	(10793 genes)	IBA ISM

GO MF

GO:0003723 [list] [network] RNA binding

(1790 genes)

IBA

KEGG

Protein

NP_001323001.1 NP_001323002.1 NP_001323003.1 NP_001323004.1 NP_563787.2 NP_849605.1

BLAST

NP_001323001.1 NP_001323002.1 NP_001323003.1 NP_001323004.1 NP_563787.2 NP_849605.1

Orthologous

[Ortholog page] AT4G35785 (ath) LOC4332350 (osa) LOC4342102 (osa) LOC4345455 (osa) LOC7458189 (ppo) LOC7468012 (ppo) LOC7481499 (ppo) LOC11430997 (mtr) LOC11440544 (mtr) LOC25490768 (mtr) LOC100246735 (vvi) LOC100263989 (vvi) LOC100282309 (zma) LOC100283023 (zma) LOC100499944 (gma) LOC100527350 (gma) LOC100798472 (gma) LOC100800398 (gma) LOC100802834 (gma) LOC100805126 (gma) LOC100808038 (gma) LOC101246587 (sly) LOC101255764 (sly) LOC101261529 (sly) LOC103834931 (bra) LOC103835535 (bra) LOC103843952 (bra) LOC103873570 (bra) LOC109122082 (vvi)

Subcellular
localization
wolf

mito 5, nucl 3, chlo 2	(predict for NP_001323001.1)
nucl 9, chlo 1, plas 1	(predict for NP_001323002.1)
chlo 4, nucl 2, cyto 1, golg 1, nucl_plas 1	(predict for NP_001323003.1)
chlo 5, mito 3, cyto 1, pero 1, golg 1, cyto_pero 1	(predict for NP_001323004.1)
nucl 9, plas 1, cysk 1, cysk_plas 1	(predict for NP_563787.2)
mito 5, nucl 3, chlo 2	(predict for NP_849605.1)

Subcellular
localization
TargetP

chlo 6, mito 5	(predict for NP_001323001.1)
chlo 4	(predict for NP_001323002.1)
chlo 4	(predict for NP_001323003.1)
chlo 6, mito 6	(predict for NP_001323004.1)
chlo 4	(predict for NP_563787.2)
chlo 6, mito 5	(predict for NP_849605.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath04141	Protein processing in endoplasmic reticulum	2

Genes directly connected with SR45a on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
12.8	MBF1C	multiprotein bridging factor 1C	[detail]	822041
11.9	AT2G20560	DNAJ heat shock family protein	[detail]	816578
11.7	AT-HSFB2B	winged-helix DNA-binding transcription factor family protein	[detail]	826771
8.9	SCL33	SC35-like splicing factor 33	[detail]	841976
7.9	AT2G41160	Ubiquitin-associated (UBA) protein	[detail]	818715
7.6	SR30	SERINE-ARGININE PROTEIN 30	[detail]	837433
7.0	AT2G19310	HSP20-like chaperones superfamily protein	[detail]	816448
4.7	AT5G18065	target of trans acting-siR480/255 protein	[detail]	831535
4.3	AT5G18340	ARM repeat superfamily protein	[detail]	831952
4.3	AT5G03285		[detail]	6241161
3.9	AT5G18040	target of trans acting-siR480/255 protein	[detail]	831925

Coexpressed
gene list

[Coexpressed gene list for SR45a]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

261081_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

261081_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

261081_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	837246
Refseq ID (protein)	NP_001323001.1
	NP_001323002.1
	NP_001323003.1
	NP_001323004.1
	NP_563787.2
	NP_849605.1

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