[←][→] ath   AT1G08130 Gene
functional annotation
Function   DNA ligase 1  
GO BP
GO:0000012 [list] [network] single strand break repair  (4 genes)  IMP  
GO:0006273 [list] [network] lagging strand elongation  (4 genes)  IBA  
GO:0051103 [list] [network] DNA ligation involved in DNA repair  (4 genes)  IEA  
GO:0006266 [list] [network] DNA ligation  (7 genes)  IBA  
GO:0080111 [list] [network] DNA demethylation  (12 genes)  IMP  
GO:0071897 [list] [network] DNA biosynthetic process  (23 genes)  IEA  
GO:0006302 [list] [network] double-strand break repair  (108 genes)  IMP  
GO:0006260 [list] [network] DNA replication  (120 genes)  IMP  
GO:0006310 [list] [network] DNA recombination  (143 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (295 genes)  IBA  
GO:0051301 [list] [network] cell division  (352 genes)  IEA  
GO:0007049 [list] [network] cell cycle  (516 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005739 [list] [network] mitochondrion  (4405 genes)  IBA IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA  
GO MF
GO:0003910 [list] [network] DNA ligase (ATP) activity  (4 genes)  IBA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG ath03030 [list] [network] DNA replication (50 genes)
ath03410 [list] [network] Base excision repair (43 genes)
ath03420 [list] [network] Nucleotide excision repair (69 genes)
ath03430 [list] [network] Mismatch repair (39 genes)
Protein NP_172293.2 
BLAST NP_172293.2 
Orthologous [Ortholog page] AT1G49250 (ath)  LOC4348965 (osa)  LOC7463320 (ppo)  LOC11410741 (mtr)  LOC25492370 (mtr)  LOC100256907 (vvi)  LOC100383890 (zma)  LOC100783155 (gma)  LOC101262281 (sly)  LOC103843415 (bra)  LOC103871561 (bra) 
Subcellular
localization
wolf
chlo 6,  chlo_mito 4,  mito 1,  plas 1  (predict for NP_172293.2)
Subcellular
localization
TargetP
chlo 7  (predict for NP_172293.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 4
ath03410 Base excision repair 4
ath03430 Mismatch repair 3
ath03420 Nucleotide excision repair 2
Genes directly connected with LIG1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.8 POLD3 DNA-directed DNA polymerase [detail] 844201
7.2 AT5G26680 5'-3' exonuclease family protein [detail] 832721
7.1 AT3G21480 BRCT domain-containing DNA repair protein [detail] 821702
6.0 ASN3 asparagine synthetase 3 [detail] 830888
4.2 AT4G32670 RING/FYVE/PHD zinc finger superfamily protein [detail] 829402
Coexpressed
gene list		 [Coexpressed gene list for LIG1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261810_at
261810_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261810_at
261810_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261810_at
261810_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837333      
Refseq ID (protein) NP_172293.2 


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