[←][→] ath   At1g08130 Gene
functional annotation
Function   DNA ligase 1      
GO BP
GO:0000012 [list] [network] single strand break repair  (2 genes)  IMP  
GO:0080111 [list] [network] DNA demethylation  (19 genes)  IMP  
GO:0006302 [list] [network] double-strand break repair  (62 genes)  IMP  
GO:0006260 [list] [network] DNA replication  (68 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  IDA  
GO:0005739 [list] [network] mitochondrion  (4228 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
KEGG ath03030 [list] [network] DNA replication (43 genes)
ath03410 [list] [network] Base excision repair (41 genes)
ath03420 [list] [network] Nucleotide excision repair (62 genes)
ath03430 [list] [network] Mismatch repair (32 genes)
Protein NP_172293.2 
BLAST NP_172293.2 
Orthologous [Ortholog page] AT1G49250 (ath)  LOC4348965 (osa)  LOC7463320 (ppo)  LOC11410741 (mtr)  LOC25492370 (mtr)  LOC100783155 (gma)  LOC100803989 (gma)  LOC101262281 (sly)  LOC103843415 (bra)  LOC103871561 (bra)  LOC123047568 (tae)  LOC123432585 (hvu) 
Subcellular
localization
wolf
chlo 6,  chlo_mito 4,  mito 1,  plas 1  (predict for NP_172293.2)
Subcellular
localization
TargetP
chlo 7  (predict for NP_172293.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 5
ath03430 Mismatch repair 4
ath03410 Base excision repair 4
ath03420 Nucleotide excision repair 2
ath03013 Nucleocytoplasmic transport 2
Genes directly connected with LIG1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.7 POLD3 DNA-directed DNA polymerase [detail] 844201
7.4 MSH2 MUTS homolog 2 [detail] 821383
7.1 EMB3012 embryo defective 3012 [detail] 834046
4.3 ARP9 actin-related protein 9 [detail] 834370
Coexpressed
gene list		 [Coexpressed gene list for LIG1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261810_at
261810_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261810_at
261810_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261810_at
261810_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837333      
Refseq ID (protein) NP_172293.2 


The preparation time of this page was 0.1 [sec].