[←][→] ath   At1g08540 Gene
functional annotation
Function   RNApolymerase sigma subunit 2      
GO BP
GO:0006352 [list] [network] DNA-templated transcription initiation  (26 genes)  IDA TAS  
GO:0006399 [list] [network] tRNA metabolic process  (69 genes)  IMP  
GO:0010114 [list] [network] response to red light  (101 genes)  IEP  
GO:0071482 [list] [network] cellular response to light stimulus  (146 genes)  IEP IMP  
GO:0009637 [list] [network] response to blue light  (160 genes)  IGI  
GO:0009658 [list] [network] chloroplast organization  (209 genes)  IMP  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1660 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5004 genes)  IDA ISM  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
KEGG
Protein NP_172330.1 
BLAST NP_172330.1 
Orthologous [Ortholog page] LOC4332388 (osa)  LOC4350441 (osa)  LOC7482402 (ppo)  LOC7491092 (ppo)  LOC11419288 (mtr)  LOC100788815 (gma)  LOC101263246 (sly)  LOC103836385 (bra)  LOC103871598 (bra)  LOC106799192 (gma)  LOC123085424 (tae)  LOC123085964 (tae)  LOC123092116 (tae)  LOC123092616 (tae)  LOC123097275 (tae)  LOC123097924 (tae)  LOC123448599 (hvu)  LOC123449035 (hvu) 
Subcellular
localization
wolf
chlo 6,  mito 2,  nucl 1,  cysk_nucl 1  (predict for NP_172330.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_172330.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
Genes directly connected with SIG2 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.3 EMB1865 CRS1 / YhbY (CRM) domain-containing protein [detail] 821368
9.6 PTAC13 plastid transcriptionally active 13 [detail] 820077
9.5 EMB2761 threonyl-tRNA synthetase, putative / threonine-tRNA ligase [detail] 815029
8.5 SIGF RNApolymerase sigma-subunit F [detail] 818273
7.5 AT3G09050 8-amino-7-oxononanoate synthase [detail] 820058
7.2 CAF2 RNA-binding CRS1 / YhbY (CRM) domain-containing protein [detail] 838948
7.0 EMB1030 Alanyl-tRNA synthetase, class IIc [detail] 832343
6.7 AT1G44920 uncharacterized protein [detail] 841058
5.5 ATS1 phospholipid/glycerol acyltransferase family protein [detail] 840112
Coexpressed
gene list		 [Coexpressed gene list for SIG2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264781_at
264781_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264781_at
264781_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264781_at
264781_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837376      
Refseq ID (protein) NP_172330.1 


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