[][] ath   AT1G08540 Gene
functional annotation
Function   RNApolymerase sigma subunit 2
GO BP
GO:0006352 [list] [network] DNA-templated transcription, initiation  (56 genes)  IDA TAS  
GO:0010114 [list] [network] response to red light  (74 genes)  IEP  
GO:0009637 [list] [network] response to blue light  (98 genes)  IGI  
GO:0071482 [list] [network] cellular response to light stimulus  (131 genes)  IEP IMP  
GO:0006399 [list] [network] tRNA metabolic process  (147 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (194 genes)  IMP  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1988 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA ISM  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
KEGG
Protein NP_172330.1 
BLAST NP_172330.1 
Orthologous [Ortholog page] LOC541716 (zma)LOC541717 (zma)LOC4332388 (osa)LOC4350441 (osa)LOC7482402 (ppo)LOC11419288 (mtr)LOC100243819 (vvi)LOC100788815 (gma)LOC101263246 (sly)LOC103836385 (bra)LOC103871598 (bra)
Subcellular
localization
wolf
chlo 6,  mito 2,  nucl 1,  cysk_nucl 1  (predict for NP_172330.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_172330.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with SIG2 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
8.8 EMB1865 CRS1 / YhbY (CRM) domain-containing protein [detail] 821368
7.7 FUG1 Translation initiation factor 2, small GTP-binding protein [detail] 838293
7.7 EMB2761 threonyl-tRNA synthetase, putative / threonine-tRNA ligase [detail] 815029
7.1 AT3G09050 8-amino-7-oxononanoate synthase [detail] 820058
6.6 CAF2 RNA-binding CRS1 / YhbY (CRM) domain-containing protein [detail] 838948
Coexpressed
gene list
[Coexpressed gene list for SIG2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264781_at
264781_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264781_at
264781_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
264781_at
264781_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 837376    
Refseq ID (protein) NP_172330.1 


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