| functional annotation |
| Function |
chloroplast RNA binding protein |
Plant GARDEN Plant GARDEN JBrowse
|
| GO BP |
|
GO:0045727 [list] [network] positive regulation of translation
|
(8 genes)
|
IMP
|
 |
|
GO:0032544 [list] [network] plastid translation
|
(21 genes)
|
IMP
|
|
|
GO:0042631 [list] [network] cellular response to water deprivation
|
(38 genes)
|
IEP
|
|
|
GO:0005996 [list] [network] monosaccharide metabolic process
|
(94 genes)
|
IMP
|
|
|
GO:0007623 [list] [network] circadian rhythm
|
(123 genes)
|
IEP
IMP
|
|
|
GO:0006364 [list] [network] rRNA processing
|
(169 genes)
|
IGI
|
|
|
GO:0009658 [list] [network] chloroplast organization
|
(209 genes)
|
IMP
|
|
|
GO:0045893 [list] [network] positive regulation of DNA-templated transcription
|
(272 genes)
|
IMP
|
|
|
GO:0009409 [list] [network] response to cold
|
(472 genes)
|
IEP
|
|
|
GO:0009611 [list] [network] response to wounding
|
(816 genes)
|
IEP
|
|
|
GO:0010468 [list] [network] regulation of gene expression
|
(2177 genes)
|
IMP
|
|
|
| GO CC |
|
| GO MF |
|
| KEGG |
|
|
| Protein |
NP_001322308.1
NP_172405.1
|
| BLAST |
NP_001322308.1
NP_172405.1
|
| Orthologous |
[Ortholog page]
LOC4352083 (osa)
LOC7478886 (ppo)
LOC25499634 (mtr)
LOC100791076 (gma)
LOC100799721 (gma)
LOC101253094 (sly)
LOC103871660 (bra)
LOC123102148 (tae)
LOC123110281 (tae)
LOC123119323 (tae)
LOC123396043 (hvu)
LOC123425623 (hvu)
LOC123425876 (hvu)
LOC123428471 (hvu)
|
Subcellular
localization
wolf |
|
nucl 3,
cyto 3,
cyto_nucl 3,
chlo 2,
cyto_pero 2
|
(predict for NP_001322308.1)
|
|
chlo 7,
nucl 1,
vacu 1,
pero 1,
cyto_nucl 1,
cysk_nucl 1,
nucl_plas 1
|
(predict for NP_172405.1)
|
|
Subcellular
localization
TargetP |
|
other 7,
scret 3
|
(predict for NP_001322308.1)
|
|
other 3
|
(predict for NP_172405.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath01200 |
Carbon metabolism |
11 |
 |
| ath00710 |
Carbon fixation in photosynthetic organisms |
9 |
 |
| ath01230 |
Biosynthesis of amino acids |
4 |
 |
| ath00630 |
Glyoxylate and dicarboxylate metabolism |
4 |
 |
| ath00010 |
Glycolysis / Gluconeogenesis |
3 |
 |
Genes directly connected with CRB on the network
| coex z* |
Locus |
Function* |
CoexViewer |
Entrez Gene ID* |
| 17.8 |
SBPASE |
sedoheptulose-bisphosphatase |
[detail] |
824746 |
| 14.7 |
GAPB |
glyceraldehyde-3-phosphate dehydrogenase B subunit |
[detail] |
840895 |
| 14.0 |
SHM1 |
serine transhydroxymethyltransferase 1 |
[detail] |
829949 |
| 12.5 |
ZKT |
protein containing PDZ domain, a K-box domain, and a TPR region |
[detail] |
841995 |
| 11.4 |
LrgB |
uncharacterized protein |
[detail] |
840100 |
| 9.0 |
GS2 |
glutamine synthetase 2 |
[detail] |
833535 |
| 7.9 |
KEA1 |
K+ efflux antiporter 1 |
[detail] |
837332 |
| 5.9 |
LHCB4.3 |
light harvesting complex photosystem II |
[detail] |
818599 |
|
Coexpressed
gene list |
[Coexpressed gene list for CRB]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
263676_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
263676_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
263676_at
X axis is samples (xls file), and Y axis is log-expression.
|
At1g09340 Gene
