[←][→] ath   At1g09570 Gene
functional annotation
Function   phytochrome A    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0010203 [list] [network] response to very low fluence red light stimulus  (1 genes)  IMP  
GO:0010201 [list] [network] response to continuous far red light stimulus by the high-irradiance response system  (2 genes)  IMP  
GO:0009584 [list] [network] detection of visible light  (5 genes)  IEA  
GO:0017006 [list] [network] protein-tetrapyrrole linkage  (7 genes)  IEA  
GO:0010161 [list] [network] red light signaling pathway  (10 genes)  IMP  
GO:0046685 [list] [network] response to arsenic-containing substance  (18 genes)  IMP  
GO:0009585 [list] [network] red, far-red light phototransduction  (20 genes)  IEA  
GO:0017148 [list] [network] negative regulation of translation  (28 genes)  IMP  
GO:0009638 [list] [network] phototropism  (30 genes)  IMP  
GO:0010218 [list] [network] response to far red light  (48 genes)  IDA ISS  
GO:0009640 [list] [network] photomorphogenesis  (80 genes)  IMP  
GO:0009630 [list] [network] gravitropism  (103 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1656 genes)  IEA  
GO CC
GO:0016604 [list] [network] nuclear body  (86 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (2529 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5004 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IDA  
GO MF
GO:0031516 [list] [network] far-red light photoreceptor activity  (2 genes)  IMP  
GO:0009883 [list] [network] red or far-red light photoreceptor activity  (3 genes)  TAS  
GO:0000155 [list] [network] phosphorelay sensor kinase activity  (14 genes)  IEA  
GO:0004673 [list] [network] protein histidine kinase activity  (17 genes)  ISS  
GO:0042803 [list] [network] protein homodimerization activity  (227 genes)  IEA  
GO:0042802 [list] [network] identical protein binding  (404 genes)  IPI  
GO:0004672 [list] [network] protein kinase activity  (768 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  HDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath04712 [list] [network] Circadian rhythm - plant (39 genes)
Protein NP_001117256.1  NP_001322906.1  NP_001322907.1  NP_001322908.1  NP_001322909.1  NP_172428.1 
BLAST NP_001117256.1  NP_001322906.1  NP_001322907.1  NP_001322908.1  NP_001322909.1  NP_172428.1 
Orthologous [Ortholog page] phyA (sly)  PHYA (gma)  LOC4333930 (osa)  LOC7482219 (ppo)  LOC11405950 (mtr)  E4 (gma)  PHYA3 (gma)  LOC100873141 (tae)  LOC100873142 (tae)  LOC103843346 (bra)  LOC103871728 (bra)  LOC123447547 (hvu) 
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_pero 2,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001117256.1)
nucl 4,  cyto 2,  nucl_plas 2,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_001322906.1)
chlo 4,  mito 3,  nucl 2,  cyto_mito 2  (predict for NP_001322907.1)
chlo 4,  mito 3,  nucl 2,  cyto_mito 2  (predict for NP_001322908.1)
chlo 4,  mito 3,  nucl 2,  cyto_mito 2  (predict for NP_001322909.1)
chlo 4,  mito 3,  nucl 2,  cyto_mito 2  (predict for NP_172428.1)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for NP_001117256.1)
chlo 5,  mito 3  (predict for NP_001322906.1)
mito 5,  chlo 4  (predict for NP_001322907.1)
mito 5,  chlo 4  (predict for NP_001322908.1)
mito 5,  chlo 4  (predict for NP_001322909.1)
mito 5,  chlo 4  (predict for NP_172428.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
Genes directly connected with PHYA on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
5.9 AT5G63190 MA3 domain-containing protein [detail] 836440
5.6 ABCB19 ATP binding cassette subfamily B19 [detail] 822519
5.3 GN sec7 domain-containing protein [detail] 837958
5.1 GA3 GA requiring 3 [detail] 832659
Coexpressed
gene list		 [Coexpressed gene list for PHYA]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264508_at
264508_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264508_at
264508_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264508_at
264508_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837483      
Refseq ID (protein) NP_001117256.1 
NP_001322906.1 
NP_001322907.1 
NP_001322908.1 
NP_001322909.1 
NP_172428.1 


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