[←][→] ath   AT1G09570 Gene
functional annotation
Function   phytochrome A  
GO BP
GO:0010203 [list] [network] response to very low fluence red light stimulus  (1 genes)  IMP  
GO:0010201 [list] [network] response to continuous far red light stimulus by the high-irradiance response system  (2 genes)  IMP  
GO:0009584 [list] [network] detection of visible light  (5 genes)  IEA  
GO:0017006 [list] [network] protein-tetrapyrrole linkage  (7 genes)  IEA  
GO:0010161 [list] [network] red light signaling pathway  (10 genes)  IMP  
GO:0046685 [list] [network] response to arsenic-containing substance  (14 genes)  IMP  
GO:0009638 [list] [network] phototropism  (24 genes)  IMP  
GO:0017148 [list] [network] negative regulation of translation  (33 genes)  IMP  
GO:0018298 [list] [network] protein-chromophore linkage  (38 genes)  IEA  
GO:0009585 [list] [network] red, far-red light phototransduction  (54 genes)  IEA  
GO:0010218 [list] [network] response to far red light  (54 genes)  IDA ISS  
GO:0009640 [list] [network] photomorphogenesis  (71 genes)  IMP  
GO:0009630 [list] [network] gravitropism  (90 genes)  IMP  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  IEA  
GO CC
GO:0016607 [list] [network] nuclear speck  (86 genes)  IEA  
GO:0016604 [list] [network] nuclear body  (115 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
GO:0031516 [list] [network] far-red light photoreceptor activity  (2 genes)  IMP  
GO:0009883 [list] [network] red or far-red light photoreceptor activity  (3 genes)  TAS  
GO:0000155 [list] [network] phosphorelay sensor kinase activity  (16 genes)  IEA  
GO:0004673 [list] [network] protein histidine kinase activity  (17 genes)  ISS  
GO:0042803 [list] [network] protein homodimerization activity  (158 genes)  IEA  
GO:0042802 [list] [network] identical protein binding  (288 genes)  IPI  
GO:0004672 [list] [network] protein kinase activity  (1017 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04712 [list] [network] Circadian rhythm - plant (36 genes)
Protein NP_001117256.1  NP_001322906.1  NP_001322907.1  NP_001322908.1  NP_001322909.1  NP_172428.1 
BLAST NP_001117256.1  NP_001322906.1  NP_001322907.1  NP_001322908.1  NP_001322909.1  NP_172428.1 
Orthologous [Ortholog page] phyA (sly)  PHYA (gma)  LOC4333930 (osa)  LOC11405950 (mtr)  PHYA (vvi)  E4 (gma)  PHYA3 (gma)  LOC103643916 (zma)  LOC103843346 (bra)  LOC103871728 (bra)  LOC115101004 (zma) 
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_pero 2,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001117256.1)
nucl 4,  cyto 2,  nucl_plas 2,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_001322906.1)
chlo 4,  mito 3,  nucl 2,  cyto_mito 2  (predict for NP_001322907.1)
chlo 4,  mito 3,  nucl 2,  cyto_mito 2  (predict for NP_001322908.1)
chlo 4,  mito 3,  nucl 2,  cyto_mito 2  (predict for NP_001322909.1)
chlo 4,  mito 3,  nucl 2,  cyto_mito 2  (predict for NP_172428.1)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for NP_001117256.1)
chlo 5,  mito 3  (predict for NP_001322906.1)
mito 5,  chlo 4  (predict for NP_001322907.1)
mito 5,  chlo 4  (predict for NP_001322908.1)
mito 5,  chlo 4  (predict for NP_001322909.1)
mito 5,  chlo 4  (predict for NP_172428.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath02010 ABC transporters 2
Genes directly connected with PHYA on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.9 AT5G63190 MA3 domain-containing protein [detail] 836440
5.4 ABCB19 ATP binding cassette subfamily B19 [detail] 822519
5.2 AT1G09575 calcium uniporter-like protein (DUF607) [detail] 837484
5.2 GA3 GA requiring 3 [detail] 832659
Coexpressed
gene list		 [Coexpressed gene list for PHYA]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264508_at
264508_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264508_at
264508_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264508_at
264508_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837483      
Refseq ID (protein) NP_001117256.1 
NP_001322906.1 
NP_001322907.1 
NP_001322908.1 
NP_001322909.1 
NP_172428.1 


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